Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L11
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.94 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.0  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   6.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.6  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   6.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 561 REVYGSMVVGFSGAVSAKDFCAKMTSLSIRPHVKFWNRKPTSVNRVTV 704
           R+ +    + F G + +     KM     RP   F+N K + V+ +TV
Sbjct: 90  RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITV 137


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 686 CQSCNRIGQYSCLRCKTCFCEE 751
           C S    G+YSCL+    F  E
Sbjct: 219 CNSKTNTGEYSCLKVDLLFKRE 240


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 686 CQSCNRIGQYSCLRCKTCFCEE 751
           C S    G+YSCL+    F  E
Sbjct: 219 CNSKTNTGEYSCLKVDLLFKRE 240


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
 Frame = +2

Query: 503 CLTSHACTCPLMDAVCLECERGVWEHGGRVFRCCFCQGFLCEDDQFEHQASCQVLESETY 682
           C TS      ++ A     E+ +  +    F  C C  F   D +    A C+     T+
Sbjct: 714 CRTSGPRGVAIVSASTARSEQFLCRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTW 773

Query: 683 KCQS--CNRIG 709
              +  C+ +G
Sbjct: 774 NTNAVDCSGLG 784


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 529 TGARMGRETFSTMTHPCLTEVTY 461
           T  R GR       +PCLTE  Y
Sbjct: 106 TRVRCGRSLEGYPFNPCLTEAQY 128


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 529 TGARMGRETFSTMTHPCLTEVTY 461
           T  R GR       +PCLTE  Y
Sbjct: 122 TRVRCGRSLEGYPFNPCLTEAQY 144


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 341 AVQRLPTCAHCGKVKC 388
           + ++L TC  CGKV C
Sbjct: 1   SAKKLFTCQLCGKVLC 16


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
 Frame = +2

Query: 524 TCPLMDAVC----LECERGV 571
           TC +MDA+C     +C+ GV
Sbjct: 637 TCNIMDAICTKLTADCQPGV 656


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,557
Number of Sequences: 438
Number of extensions: 5672
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)