Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L10
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.92 
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    24   2.1  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   2.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   2.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   2.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 526 WGSETTKRDWTKETCNRRTLYFYMSFTFSLKNIEKFIL-FTKVPNKIL 666
           WG    K D   ET  R   Y+Y     +  + ++ +  F  VP  I+
Sbjct: 500 WGLHKNKPDMNYETMGRALRYYYQRGILAKVDGQRLVYQFVDVPKDII 547


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 180 KVDEVVGIMRVNVEKVLERDQKL----SELDNRADALQHGAAQFEQQ 308
           K++E   ++ VN+EK  +  +K     + L NR    QH ++++ ++
Sbjct: 188 KIEEQDTVLVVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSRE 234


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 180 KVDEVVGIMRVNVEKVLERDQKL----SELDNRADALQHGAAQFEQQ 308
           K++E   ++ VN+EK  +  +K     + L NR    QH ++++ ++
Sbjct: 177 KIEEHDTVLVVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSRE 223


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 180 KVDEVVGIMRVNVEKVLERDQKL----SELDNRADALQHGAAQFEQQ 308
           K++E   ++ VN+EK  +  +K     + L NR    QH ++++ ++
Sbjct: 188 KIEEHDTVLVVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSRE 234


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 180 KVDEVVGIMRVNVEKVLERDQKL----SELDNRADALQHGAAQFEQQ 308
           K++E   ++ VN+EK  +  +K     + L NR    QH ++++ ++
Sbjct: 177 KIEEHDTVLVVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSRE 223


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -2

Query: 223 FSTLTRIMPTTSSTLACVCAKRLSLTLGAELPPCSSIFTVYYALFLL 83
           F T+  I+P    T   V    L    G ++  CSSI       FLL
Sbjct: 251 FYTVNLIIPCVGITFLTVLVFYLPSDSGEKVSLCSSILLSLTVFFLL 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,849
Number of Sequences: 438
Number of extensions: 4695
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)