Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_L08
(940 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48055-3|CAH04721.1| 35|Caenorhabditis elegans Hypothetical pr... 48 1e-05
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.68
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.68
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.68
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.6
>Z48055-3|CAH04721.1| 35|Caenorhabditis elegans Hypothetical
protein T07A5.5 protein.
Length = 35
Score = 47.6 bits (108), Expect = 1e-05
Identities = 17/31 (54%), Positives = 28/31 (90%)
Frame = +3
Query: 132 MITDIQLAVFSNILGVSIFLLVILYHYINAN 224
MI+D+QL + +NILG+++ +LV+L+HY+NAN
Sbjct: 1 MISDVQLGIAANILGIAMLMLVVLFHYLNAN 31
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.68
Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Frame = -3
Query: 824 PXFXGKPXXPPXXGXXKPXX---PXPXXXGXXGFFXGGXXXGGPXKXX---PPFPRXVGG 663
P G P PP G P P P G GG P PP P GG
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Query: 662 FXLXXXKPPPTXPPG 618
F PPP PPG
Sbjct: 780 F---KGGPPPPPPPG 791
Score = 31.5 bits (68), Expect = 0.90
Identities = 21/80 (26%), Positives = 24/80 (30%)
Frame = -1
Query: 916 VFGGXEXXTXXXGFXXFXGPXXXKXFSXGXPPXXXGNPXXPPXXGXXNPXPPXXXXXGXX 737
+ GG G G G PP G P PP G P PP G
Sbjct: 722 ITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG-- 779
Query: 736 XFXXGXXGXGXPXXXXPLSP 677
F G P P++P
Sbjct: 780 -FKGGPPPPPPPGMFAPMAP 798
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.68
Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Frame = -3
Query: 824 PXFXGKPXXPPXXGXXKPXX---PXPXXXGXXGFFXGGXXXGGPXKXX---PPFPRXVGG 663
P G P PP G P P P G GG P PP P GG
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Query: 662 FXLXXXKPPPTXPPG 618
F PPP PPG
Sbjct: 780 F---KGGPPPPPPPG 791
Score = 31.5 bits (68), Expect = 0.90
Identities = 21/80 (26%), Positives = 24/80 (30%)
Frame = -1
Query: 916 VFGGXEXXTXXXGFXXFXGPXXXKXFSXGXPPXXXGNPXXPPXXGXXNPXPPXXXXXGXX 737
+ GG G G G PP G P PP G P PP G
Sbjct: 722 ITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG-- 779
Query: 736 XFXXGXXGXGXPXXXXPLSP 677
F G P P++P
Sbjct: 780 -FKGGPPPPPPPGMFAPMAP 798
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.68
Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Frame = -3
Query: 824 PXFXGKPXXPPXXGXXKPXX---PXPXXXGXXGFFXGGXXXGGPXKXX---PPFPRXVGG 663
P G P PP G P P P G GG P PP P GG
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362
Query: 662 FXLXXXKPPPTXPPG 618
F PPP PPG
Sbjct: 363 F---KGGPPPPPPPG 374
Score = 31.5 bits (68), Expect = 0.90
Identities = 21/80 (26%), Positives = 24/80 (30%)
Frame = -1
Query: 916 VFGGXEXXTXXXGFXXFXGPXXXKXFSXGXPPXXXGNPXXPPXXGXXNPXPPXXXXXGXX 737
+ GG G G G PP G P PP G P PP G
Sbjct: 305 ITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG-- 362
Query: 736 XFXXGXXGXGXPXXXXPLSP 677
F G P P++P
Sbjct: 363 -FKGGPPPPPPPGMFAPMAP 381
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/68 (33%), Positives = 25/68 (36%)
Frame = -3
Query: 824 PXFXGKPXXPPXXGXXKPXXPXPXXXGXXGFFXGGXXXGGPXKXXPPFPRXVGGFXLXXX 645
P G P P G P P P G G + G GGP PP P G +
Sbjct: 394 PSAFGAPQGPGGPGGYGP--PPPGGPGAPGSY--GPPQGGPGGFGPPPPGGPGAYG---- 445
Query: 644 KPPPTXPP 621
PPPT P
Sbjct: 446 -PPPTGFP 452
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/80 (27%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Frame = -1
Query: 838 SXGXPPXXX----GNPXXPPXXGXXNPXPPXXXXXGXXXFXXGXXGXGXPXXXXPLSPGX 671
S G PP GN PP G P G G G G P P +PG
Sbjct: 363 SFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGS 422
Query: 670 WXGXFXXXKNLPQPSPXXPG 611
+ P P PG
Sbjct: 423 YGPPQGGPGGFGPPPPGGPG 442
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 668 PPPGGKGXXXXWXPXPXXPXXKXPXXPGXXG 760
PPPGG G + P P P PG G
Sbjct: 412 PPPGGPGAPGSYGPPQGGPGGFGPPPPGGPG 442
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,105,970
Number of Sequences: 27780
Number of extensions: 223215
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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