Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L07
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.5  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    26   8.1  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   8.1  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 407 TSPCLISQKSHVLYNLKSVSK*NCIIIDYESGVSPIDRGR 288
           TSP + +   +  Y +KS  +  CIII  ESG    +  +
Sbjct: 105 TSPHVYAIAENAYYQMKSYHENQCIIISGESGAGKTEAAK 144


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 369 QNMGFLRN*TRTSYI*KKLH*IKHELRDSSFFLKMDLHHSQNKRSI 506
           +N   +RN TRT    + LH I    R SS   K ++H+SQ   S+
Sbjct: 59  ENSSSVRN-TRTHKFKQLLHYIFFSNRSSSVLGKQNVHNSQTLGSV 103


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 728  KEFVFEMKLYXIFL*KNTNQNLND 657
            ++FVFE+  Y + L  +T+Q+LN+
Sbjct: 1274 QQFVFELFPYSVLLSSSTSQDLNE 1297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,052
Number of Sequences: 5004
Number of extensions: 68149
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)