Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_L06
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 195 8e-51
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 29 1.2
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 29 1.2
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 28 2.1
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 28 2.1
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c... 27 2.8
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 27 4.8
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 4.8
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 26 6.4
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 26 8.4
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 8.4
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 8.4
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 195 bits (475), Expect = 8e-51
Identities = 100/189 (52%), Positives = 132/189 (69%), Gaps = 8/189 (4%)
Frame = +2
Query: 341 KKDNFNSQAPTTKLTSYQPTEKLFKRYINKINV-DKYEPMSNNTEKFIDQNDRK------ 499
+++NF + + +K+ S RY+N I + D++E T + +
Sbjct: 47 RQENFGNNS--SKINSVNDHVSTLSRYVNNIKLNDRFEAEGFRTRGLLILHTFTFSCLIV 104
Query: 500 -KDNERIRIKDKHDRATAEQVMDPRTKMILFKLLNRGIINEINGCISTGKEANVYHATSK 676
+ ++ IKDK DRAT+EQV+DPRT+MIL KL+N G I+EINGCISTGKEANVYHAT++
Sbjct: 105 LTNKDKSSIKDKSDRATSEQVLDPRTRMILLKLINNGTISEINGCISTGKEANVYHATNE 164
Query: 677 DGRDFAIKIFKTSILVFKDRDKYVSGEYRFRNGYCRSNPRKMVRTWAEKEMRNLVRLYNA 856
DG+ FAIKI+KTSILVFKDRD+YVSGE+RFR+GY + NPRKMVR WAEKE+RNL R+ A
Sbjct: 165 DGKHFAIKIYKTSILVFKDRDRYVSGEFRFRHGYNKRNPRKMVRLWAEKEIRNLKRVAAA 224
Query: 857 QLNVPXFIL 883
+ P IL
Sbjct: 225 GIPCPEPIL 233
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 578 MILFKLLNRGIINEINGCISTGKEANVYHATSKDGRDFAIKIFKTSILVFK 730
+ L L R + + I GKE++VY + G+ + +KI + + F+
Sbjct: 75 LALKALSKRASVYSVGNQIGVGKESDVYVVGDQKGKQYILKIHRLGRISFR 125
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 482 DQNDRKKDNERIRIKDKHDRATAEQVMDPRTKMILFKLLNRGIINEINGCISTGKEANV 658
D +N RIR+ E P ++ K+ RG+ N + GC+ +G +V
Sbjct: 181 DAKSVPSENGRIRVSMSPQN---EINFTPENPAVMEKIRKRGVCNSVEGCLYSGSPKSV 236
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Frame = +2
Query: 389 YQPTEKLFKRYI---NKINVDKYEPMSNN-------TEKFIDQNDRKKDNERIRIKDKHD 538
Y+PT+K K+ N +N + P ++N T+ +D+N++ K+N++ + +
Sbjct: 60 YRPTKKELKKAKMNGNAVNSKELSPNTDNQNTPAGPTKHSLDENEKDKENKKSKKETVSS 119
Query: 539 RATAEQVMDPRTKMILFKLLNR 604
A + ++ L+KLL +
Sbjct: 120 PAEQLLALTQNQEISLYKLLKK 141
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 867 TLSCALYSLTKFLISFSAQVRTI-LRGLDLQ*PFRNRYSPDTYLSRSLNTNIDVLNILMA 691
T+ CAL +FL+SFS + + + L+ +D+ P ++S D + +I VL L
Sbjct: 109 TIRCALNCTQEFLLSFSNESKELYLKAVDVVMPLLVKFSVD-LRPKVRKISIQVLQTLKQ 167
Query: 690 K 688
K
Sbjct: 168 K 168
>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 298
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 797 KMVRTWAEKEMRNLVRLYNAQLNVPXFILDRVXR 898
K +R W+ +E L + YN++++ F+L R
Sbjct: 256 KPLRKWSPEEENKLCKYYNSEIHAASFVLPTFAR 289
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 765 NRYSP---DTYLSRSLNTNIDVLNILMAKSRPSFE 670
NR +P TYL +SLN+ +D L + K + FE
Sbjct: 259 NRLNPVVWRTYLRKSLNSYVDKLEVYCQKRKSLFE 293
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 4.8
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 446 YEPMSN-NTEKFIDQNDRKKDNERIRIKDKHDRATAEQVMDPRTKMILFKLLNRGIINE 619
YE S+ TE+ D +R++ ER+R KD + AT E V D +K +L R + ++
Sbjct: 167 YEKSSDPETERLNDLREREEFEERLRRKDL-EAATNEFVEDYSSKFSSEELALRKLADD 224
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 428 KINVDKYEPMSNNTEKFIDQNDRKKDNERIRIKDKHDRATAE 553
+ V KY + NTEK ID+ + N K D A+ +
Sbjct: 449 RTGVSKYFKLQKNTEKEIDEQVPSQSNNTTPTSAKSDSASPQ 490
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 365 APTTKLTSYQPTEKLFKRYINKI---NVDKYEPMSNNTEKFIDQND 493
A + +LTS P EK K YI K+ ++++ + + NT + + Q+D
Sbjct: 252 ASSKELTSLVPNEKNPKEYILKLLFDHLNRKKTNNFNTHQILSQSD 297
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 320 DPTQGTKKKDNFNSQAPTTKLTSYQPTEKL 409
D T+ TK+ +NF S P T S Q +EKL
Sbjct: 53 DSTESTKRSENFVSHIPLTPSHSGQ-SEKL 81
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +2
Query: 425 NKINVDKYEPMSNNTEKFIDQNDRKKDNERIRIKDKHDRATAEQVMD 565
N ++K E + N ++ ND+K+D + + ++ A E+ D
Sbjct: 70 NDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEED 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,547
Number of Sequences: 5004
Number of extensions: 67098
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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