Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L05
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894...    30   2.2  
07_03_0456 - 18382373-18382582,18382785-18383231                       30   2.2  
05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361     29   5.0  
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    29   6.6  
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535...    28   8.8  

>12_02_1036 -
           25587313-25587890,25589209-25589272,25589356-25589448,
           25589533-25589683,25590474-25590539,25590594-25590907
          Length = 421

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 101 RPPQHVAGVAWARMRRPRR-ASSDVARPLDWPRY*RDSPRRLATRQTRISI 250
           RP + V G AW  +RRP    +SDV      P++ RD+ ++L     R SI
Sbjct: 318 RPTEEVRGEAWHYLRRPSEDGTSDVMEGHADPKFQRDN-KQLENHVDRYSI 367


>07_03_0456 - 18382373-18382582,18382785-18383231
          Length = 218

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 132 GPGCDGRDVRPATSLGLWTGRATDV 206
           GPGC GR   P +  GL +G AT V
Sbjct: 188 GPGCRGRSSLPRSHFGLRSGEATKV 212


>05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361
          Length = 760

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 111 NMWLGSRGPGCDGRDVRPATSLGLWTGRATDVTRLDDSRPDKR 239
           N W G+ G G     +  A+SLGL+ G ++  +    SRPD R
Sbjct: 633 NGWGGTWGSGGTSSSLGAASSLGLFRGWSSSESSSSLSRPDWR 675


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
 Frame = -2

Query: 271 VQNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAGR--------TSRPSHPGPR 128
           +++  P  G +   GR SS  ++S+   + RP+   GR        +SRPS PGPR
Sbjct: 268 MRSSAPAVGRSPSVGRSSS--ISSLTSSINRPAANGGRNSAPSSAPSSRPSSPGPR 321


>06_03_0310 -
           19453047-19453160,19453240-19453338,19453441-19453513,
           19453598-19453708,19453795-19453956,19454064-19454340,
           19454542-19455160,19455256-19455471
          Length = 556

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/75 (29%), Positives = 28/75 (37%)
 Frame = -2

Query: 253 HYGYARLSGRESSRRVTSVARPVQRPSDVAGRTSRPSHPGPRDPSHMLGRSRCTQGXPGT 74
           H  Y  L GR+++ R  S   P   P D A   S P  P P  P      +      P  
Sbjct: 135 HRRYIILPGRQAASRAPSPPAPPSPPQDPA--PSLPHAPAPPPPQ---APAPTPPQAPAP 189

Query: 73  VPLRCPSLXLKECPL 29
            P R P+    + PL
Sbjct: 190 TPPRAPTPTPPQAPL 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,326,535
Number of Sequences: 37544
Number of extensions: 352179
Number of successful extensions: 941
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)