Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_L04
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 34 0.18
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 31 1.3
04_03_0057 + 10407402-10407452,10407540-10407782,10408506-104089... 30 2.2
02_05_0686 - 30900748-30902167,30903442-30904742 27 2.6
07_03_0154 + 14509979-14512033 30 2.9
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 30 2.9
12_02_0299 - 17051570-17052474,17053542-17053755 29 3.9
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 29 3.9
07_01_0753 - 5799733-5799741,5799938-5800642 29 6.7
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 28 8.9
07_01_0479 + 3606663-3607448 28 8.9
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 33.9 bits (74), Expect = 0.18
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 796 GXXPAFSXGPPPPXXPSPPXP 858
G PAFS PPPP P PP P
Sbjct: 556 GNKPAFSPPPPPPPPPPPPLP 576
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 31.1 bits (67), Expect = 1.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 805 PAFSXGPPPPXXPSPPXPI 861
P + GPPPP P PP P+
Sbjct: 416 PTHTHGPPPPPPPPPPPPV 434
>04_03_0057 +
10407402-10407452,10407540-10407782,10408506-10408976,
10409058-10409483,10409559-10409618,10409694-10409807,
10409888-10409956
Length = 477
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 787 RKRGXXPAFSXGPPPPXXPSPP 852
RK+ F PPPP PSPP
Sbjct: 404 RKKSAATTFKPAPPPPPPPSPP 425
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.1 bits (57), Expect(2) = 2.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 823 PPPPXXPSPPXP 858
PPPP PSPP P
Sbjct: 356 PPPPKGPSPPPP 367
Score = 21.4 bits (43), Expect(2) = 2.6
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 814 SXGPPPPXXPSP 849
S PPPP P P
Sbjct: 310 SPAPPPPPPPKP 321
>07_03_0154 + 14509979-14512033
Length = 684
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 790 KRGXXPAFSXGPPPPXXPSPPXP 858
+RG P + PPPP P PP P
Sbjct: 42 ERGPLPLPAAAPPPPPPPPPPPP 64
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 805 PAFSXGPPPPXXPSPPXPI 861
P F PPPP P PP P+
Sbjct: 24 PGFPVAPPPPMGPPPPPPM 42
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 805 PAFSXGPPPPXXPSPPXP 858
P+F PPPP P PP P
Sbjct: 314 PSFYPSPPPPPPPPPPPP 331
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 29.5 bits (63), Expect = 3.9
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -1
Query: 831 GGGPXGKC-RXXAPFSGXGQXEGLLGXRXXGGDPPDSXENGFT-PXGGR*XRXXXP 670
GGG G+ P+SG G G G GG PP +GF P G R P
Sbjct: 5 GGGRGGRGGEQRPPYSGRGDVPGRGGGGGGGGAPPYRPASGFVWPPPGMTPRPGPP 60
>07_01_0753 - 5799733-5799741,5799938-5800642
Length = 237
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 805 PAFSXGPPPPXXPSPPXP 858
PA + PPPP P PP P
Sbjct: 37 PAAAYAPPPPPPPPPPPP 54
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 790 KRGXXPAFSXGPPPPXXPSPPXPI 861
KR P PPPP P PP P+
Sbjct: 254 KRAPPPQSVRPPPPPPPPPPPPPM 277
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 787 RKRGXXPAFSXGPPPPXXP 843
R G PAF GPPPP P
Sbjct: 189 RPPGVPPAFPGGPPPPPGP 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.143 0.494
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,876,511
Number of Sequences: 37544
Number of extensions: 262899
Number of successful extensions: 1585
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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