Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_L04
(909 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L12347-1|AAA36358.1| 718|Homo sapiens collagen protein. 33 1.9
D38163-1|BAA07368.1| 1142|Homo sapiens a1(XIX) collagen chain pr... 33 1.9
BC113364-1|AAI13365.1| 1142|Homo sapiens collagen, type XIX, alp... 33 1.9
BC113362-1|AAI13363.1| 1142|Homo sapiens collagen, type XIX, alp... 33 1.9
AL359539-1|CAI16492.1| 1142|Homo sapiens collagen type XIX alpha... 33 1.9
AL160262-5|CAI42322.1| 1142|Homo sapiens collagen type XIX alpha... 33 1.9
AL160262-1|CAI42319.2| 764|Homo sapiens collagen type XIX alpha... 33 1.9
AL136445-2|CAI42716.1| 1142|Homo sapiens collagen type XIX alpha... 33 1.9
AL136445-1|CAC12699.3| 764|Homo sapiens collagen type XIX alpha... 33 1.9
AL133388-3|CAI42497.1| 1142|Homo sapiens collagen type XIX alpha... 33 1.9
AL133388-1|CAI42496.2| 764|Homo sapiens collagen type XIX alpha... 33 1.9
AL118519-1|CAB99331.2| 1142|Homo sapiens collagen type XIX alpha... 33 1.9
AB004629-1|BAA23309.1| 1143|Homo sapiens Type XIX collagen a1 ch... 33 1.9
Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for ... 32 3.3
X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for ... 32 3.3
M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen ... 32 3.3
BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein. 32 3.3
BC142626-1|AAI42627.1| 519|Homo sapiens COL4A1 protein protein. 32 3.3
AL390755-2|CAM20295.1| 1318|Homo sapiens collagen type IV alpha ... 32 3.3
AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha ... 32 3.3
AL161773-2|CAM14222.1| 1318|Homo sapiens collagen type IV alpha ... 32 3.3
AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha ... 32 3.3
BC024312-1|AAH24312.2| 576|Homo sapiens MED25 protein protein. 31 7.6
>L12347-1|AAA36358.1| 718|Homo sapiens collagen protein.
Length = 718
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 491 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 550
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 551 GTPGNDGVPGRDGKPG-LPGPPG 572
>D38163-1|BAA07368.1| 1142|Homo sapiens a1(XIX) collagen chain
precursor protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 596 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 655
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 656 GTPGNDGVPGRDGKPG-LPGPPG 677
>BC113364-1|AAI13365.1| 1142|Homo sapiens collagen, type XIX, alpha
1 protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 596 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 655
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 656 GTPGNDGVPGRDGKPG-LPGPPG 677
>BC113362-1|AAI13363.1| 1142|Homo sapiens collagen, type XIX, alpha
1 protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 596 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 655
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 656 GTPGNDGVPGRDGKPG-LPGPPG 677
>AL359539-1|CAI16492.1| 1142|Homo sapiens collagen type XIX alpha 1
protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 596 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 655
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 656 GTPGNDGVPGRDGKPG-LPGPPG 677
>AL160262-5|CAI42322.1| 1142|Homo sapiens collagen type XIX alpha 1
protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 596 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 655
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 656 GTPGNDGVPGRDGKPG-LPGPPG 677
>AL160262-1|CAI42319.2| 764|Homo sapiens collagen type XIX alpha 1
protein.
Length = 764
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 218 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 277
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 278 GTPGNDGVPGRDGKPG-LPGPPG 299
>AL136445-2|CAI42716.1| 1142|Homo sapiens collagen type XIX alpha 1
protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 596 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 655
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 656 GTPGNDGVPGRDGKPG-LPGPPG 677
>AL136445-1|CAC12699.3| 764|Homo sapiens collagen type XIX alpha 1
protein.
Length = 764
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 218 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 277
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 278 GTPGNDGVPGRDGKPG-LPGPPG 299
>AL133388-3|CAI42497.1| 1142|Homo sapiens collagen type XIX alpha 1
protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 596 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 655
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 656 GTPGNDGVPGRDGKPG-LPGPPG 677
>AL133388-1|CAI42496.2| 764|Homo sapiens collagen type XIX alpha 1
protein.
Length = 764
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 218 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 277
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 278 GTPGNDGVPGRDGKPG-LPGPPG 299
>AL118519-1|CAB99331.2| 1142|Homo sapiens collagen type XIX alpha 1
protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 596 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 655
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 656 GTPGNDGVPGRDGKPG-LPGPPG 677
>AB004629-1|BAA23309.1| 1143|Homo sapiens Type XIX collagen a1 chain
protein.
Length = 1143
Score = 32.7 bits (71), Expect = 1.9
Identities = 23/83 (27%), Positives = 28/83 (33%)
Frame = +3
Query: 354 PXXXGXPXPKXEKXLGXFGPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXX 533
P G PK E+ L + GPQ + G G P P
Sbjct: 597 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTP 656
Query: 534 XXPGSXGXXGRXGRXXEFPXPPG 602
PG+ G GR G+ P PPG
Sbjct: 657 GTPGNDGVPGRDGKPG-LPGPPG 678
>Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for
alpha1 chain of basement membrane (type IV) collagen.in
neoplastic tissue). ).
Length = 1212
Score = 31.9 bits (69), Expect = 3.3
Identities = 26/76 (34%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Frame = -3
Query: 739 GSPRFPGERVYP-------XWGEVXXXGXTEXPXXXXXXGPKKEXXPXXQPPFPGGXGNS 581
GSP FPGE YP GE G P GP E P PG G
Sbjct: 254 GSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEP 313
Query: 580 XXR--PXLPXXPXDPG 539
+ P LP P PG
Sbjct: 314 GPKGFPGLPGQPGPPG 329
>X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for
alpha-1 chain of collagen IV N-terminus. ).
Length = 944
Score = 31.9 bits (69), Expect = 3.3
Identities = 26/76 (34%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Frame = -3
Query: 739 GSPRFPGERVYPXW-------GEVXXXGXTEXPXXXXXXGPKKEXXPXXQPPFPGGXGNS 581
GSP FPGE YP GE G P GP E P PG G
Sbjct: 299 GSPGFPGEPGYPGLIGRQGPAGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEP 358
Query: 580 XXR--PXLPXXPXDPG 539
+ P LP P PG
Sbjct: 359 GPKGFPGLPGQPGPPG 374
>M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen
protein.
Length = 1669
Score = 31.9 bits (69), Expect = 3.3
Identities = 26/76 (34%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Frame = -3
Query: 739 GSPRFPGERVYP-------XWGEVXXXGXTEXPXXXXXXGPKKEXXPXXQPPFPGGXGNS 581
GSP FPGE YP GE G P GP E P PG G
Sbjct: 299 GSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEP 358
Query: 580 XXR--PXLPXXPXDPG 539
+ P LP P PG
Sbjct: 359 GPKGFPGLPGQPGPPG 374
>BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein.
Length = 1669
Score = 31.9 bits (69), Expect = 3.3
Identities = 26/76 (34%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Frame = -3
Query: 739 GSPRFPGERVYP-------XWGEVXXXGXTEXPXXXXXXGPKKEXXPXXQPPFPGGXGNS 581
GSP FPGE YP GE G P GP E P PG G
Sbjct: 299 GSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEP 358
Query: 580 XXR--PXLPXXPXDPG 539
+ P LP P PG
Sbjct: 359 GPKGFPGLPGQPGPPG 374
>BC142626-1|AAI42627.1| 519|Homo sapiens COL4A1 protein protein.
Length = 519
Score = 31.9 bits (69), Expect = 3.3
Identities = 26/76 (34%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Frame = -3
Query: 739 GSPRFPGERVYP-------XWGEVXXXGXTEXPXXXXXXGPKKEXXPXXQPPFPGGXGNS 581
GSP FPGE YP GE G P GP E P PG G
Sbjct: 299 GSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEP 358
Query: 580 XXR--PXLPXXPXDPG 539
+ P LP P PG
Sbjct: 359 GPKGFPGLPGQPGPPG 374
>AL390755-2|CAM20295.1| 1318|Homo sapiens collagen type IV alpha 1
protein.
Length = 1318
Score = 31.9 bits (69), Expect = 3.3
Identities = 26/76 (34%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Frame = -3
Query: 739 GSPRFPGERVYP-------XWGEVXXXGXTEXPXXXXXXGPKKEXXPXXQPPFPGGXGNS 581
GSP FPGE YP GE G P GP E P PG G
Sbjct: 299 GSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEP 358
Query: 580 XXR--PXLPXXPXDPG 539
+ P LP P PG
Sbjct: 359 GPKGFPGLPGQPGPPG 374
>AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 31.9 bits (69), Expect = 3.3
Identities = 26/76 (34%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Frame = -3
Query: 739 GSPRFPGERVYP-------XWGEVXXXGXTEXPXXXXXXGPKKEXXPXXQPPFPGGXGNS 581
GSP FPGE YP GE G P GP E P PG G
Sbjct: 299 GSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEP 358
Query: 580 XXR--PXLPXXPXDPG 539
+ P LP P PG
Sbjct: 359 GPKGFPGLPGQPGPPG 374
>AL161773-2|CAM14222.1| 1318|Homo sapiens collagen type IV alpha 1
protein.
Length = 1318
Score = 31.9 bits (69), Expect = 3.3
Identities = 26/76 (34%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Frame = -3
Query: 739 GSPRFPGERVYP-------XWGEVXXXGXTEXPXXXXXXGPKKEXXPXXQPPFPGGXGNS 581
GSP FPGE YP GE G P GP E P PG G
Sbjct: 299 GSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEP 358
Query: 580 XXR--PXLPXXPXDPG 539
+ P LP P PG
Sbjct: 359 GPKGFPGLPGQPGPPG 374
>AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 31.9 bits (69), Expect = 3.3
Identities = 26/76 (34%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Frame = -3
Query: 739 GSPRFPGERVYP-------XWGEVXXXGXTEXPXXXXXXGPKKEXXPXXQPPFPGGXGNS 581
GSP FPGE YP GE G P GP E P PG G
Sbjct: 299 GSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEP 358
Query: 580 XXR--PXLPXXPXDPG 539
+ P LP P PG
Sbjct: 359 GPKGFPGLPGQPGPPG 374
>BC024312-1|AAH24312.2| 576|Homo sapiens MED25 protein protein.
Length = 576
Score = 30.7 bits (66), Expect = 7.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 760 QKALXLAXTRKRGXXPAFSXGPPPPXXPSPP 852
Q A+ A +K G P FS P P P PP
Sbjct: 132 QNAVEAAKNQKAGLGPRFSQAPAPQLPPGPP 162
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.315 0.143 0.494
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,901,341
Number of Sequences: 237096
Number of extensions: 1737206
Number of successful extensions: 7273
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6706
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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