Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L04
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.     29   6.1  
U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter...    28   8.0  

>L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
 Frame = +3

Query: 408 GPTRXXXGPQKXAXLEKXGIXWXXGXP*KPAKTXXPPXXXXXXXPGSXGXXGRXGRXXE- 584
           GP      P       + GI    G    P K   P        PG  G  G  GR  E 
Sbjct: 174 GPAGVPGHPGFPGDPGEYGIGGRPGSDGMPGKPGDPGLAGPIGPPGESGPIGDKGRTPEA 233

Query: 585 --FPXPPGKGG 611
              P PPG  G
Sbjct: 234 HVIPGPPGDSG 244


>U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 2 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
 Frame = +3

Query: 462 GIXWXXGXP*KPAKTXXPPXXXXXXXPGSXGXXGRXGRXXE---FPXPPGKGG 611
           GI    G    P K   P        PG  G  G  GR  E    P PPG  G
Sbjct: 192 GIGGRPGSDGMPGKPGDPGLAGPIGPPGESGPIGDKGRTPEAHVIPGPPGDSG 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.143    0.494 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,579,258
Number of Sequences: 27780
Number of extensions: 202718
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)