Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L03
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    39   8e-04
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    36   0.008
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    28   2.1  
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |...    26   8.4  

>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
 Frame = +1

Query: 289 SALYLEHYLDSLQHLPIELQRNFKLMRDLDDRAHGLMRTI---DLMADELLPSIPKMDEE 459
           +A  L  YL +L ++P E +  F  +   +   H + + I   D      + S   +   
Sbjct: 5   TAYILSEYLQTLDNVPNETKHIFDEISVKEVAVHDIWKRIQAADSQIQSYIKSHGSLTPH 64

Query: 460 TKKEKV-NTIQGLFNKAKEYGDDKVQLAIQTYELVDKHIRRLDSDLAR 600
            K++ + +TI+  + KA    ++KVQLA +    + +HI+RLD  LA+
Sbjct: 65  PKEDALYSTIREEYQKAINIQNEKVQLADRARLGLTRHIKRLDDRLAK 112


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 23/109 (21%), Positives = 49/109 (44%)
 Frame = +1

Query: 301 LEHYLDSLQHLPIELQRNFKLMRDLDDRAHGLMRTIDLMADELLPSIPKMDEETKKEKVN 480
           L  + D++  +P  +   F  ++++D +   + + +      +L +  K DE + +E+  
Sbjct: 12  LNDFTDAIVSVPESVCGKFTSLKEIDAQVRDIRQNVIQEIGVVLKN-EKNDELSGEERCE 70

Query: 481 TIQGLFNKAKEYGDDKVQLAIQTYELVDKHIRRLDSDLARFESEIQEKV 627
            +Q    +   Y D K+ LA      +   I RLD+     E EI +++
Sbjct: 71  RLQKTLKEILPYSDSKICLATDAMNNIKSCIDRLDAGFEYVELEIPQQL 119


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 499 NKAKEYGDDKVQLAIQTYELVDKHIRRLDSDLARFE--SEIQEK 624
           +K KEY DD      Q  E +DK IRR   DL+ F+  SEI +K
Sbjct: 104 SKWKEYFDDN-----QILEQIDKDIRRTLPDLSFFQGKSEINKK 142


>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 25/117 (21%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
 Frame = +1

Query: 256 SVARTNFIKMTSALYLEHYLDSLQ-HLPIE-LQRNFKLMRDLDDRAHGLMRTIDLMADEL 429
           S+    +++  +A Y+    D ++ H  +E L R+++ +R +   +   +  +D + D+L
Sbjct: 95  SIPEFKYLRALAAFYVRLTWDDVEVHQTLEPLLRDYRKLR-IRTNSEIRLTYLDEVVDDL 153

Query: 430 LP-------SIPKMDEETKKEKVNTIQGLFNKAKEYGDDKVQLA-IQTYE-LVDKHI 573
           L        S+P +    + E ++ ++ L + + E  DD+ Q++ +++ E  VD++I
Sbjct: 154 LNAEVVCDISLPPLRSRLQLEDLDLLEPLSSSSDEEDDDEEQISKLESNEGAVDRNI 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,631
Number of Sequences: 5004
Number of extensions: 47641
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)