Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L03
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1128 + 30590727-30590772,30590868-30590939,30591181-305913...    64   1e-10
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239...    56   5e-08
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630...    33   0.41 
09_02_0212 + 5820866-5821031,5821172-5821224,5821512-5821639,582...    31   0.94 
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845     28   8.8  

>03_05_1128 +
           30590727-30590772,30590868-30590939,30591181-30591371,
           30592004-30592067,30592713-30592963,30593066-30593104,
           30593193-30593213
          Length = 227

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
 Frame = +1

Query: 289 SALYLEHYLDSLQHLPIELQRNFKLMRDLDDRAHGLMRTIDLMADELLPSIPKM------ 450
           + +Y++ YL+    L  +LQR    MR+LD+RAHG+M         LL  +P        
Sbjct: 6   TGVYVDDYLEYSSTLAGDLQRILSTMRELDERAHGIMGQTKEQIKYLL-GVPSHGFDRSN 64

Query: 451 --DEETKKEKVNT-IQGLFNKAKEYGDDKVQLAIQTYELVDKHIRRLDSDLARFESEIQE 621
             D+E+  E++   I+   + A     +KV LA Q Y+L++ HI+RLD DL +F  ++++
Sbjct: 65  MDDDESASERMKKDIEASQDNALSLCTEKVLLARQAYDLIESHIKRLDEDLGQFAEDLKQ 124

Query: 622 K 624
           +
Sbjct: 125 E 125


>03_01_0306 +
           2391831-2391858,2392831-2392902,2393511-2393698,
           2394143-2394203,2394306-2394368,2394396-2394474,
           2394557-2394689,2394727-2394934,2398088-2398143,
           2398252-2400030,2400128-2400281,2400467-2401125
          Length = 1159

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
 Frame = +1

Query: 298 YLEHYLDSLQHLPIELQRNFKLMRDLDDRAHGLMRTIDLMADELLPSIPKMDEETK---- 465
           +LE +  S++ LP  LQRN+ LMR+LD    G+    +    + +  I    E       
Sbjct: 3   FLEDFQASVEALPAMLQRNYSLMRELDKSLQGVQTGNEQRCQQEIEDIKHGLESGSITYD 62

Query: 466 KEKVNTIQGLFNKAKE---YGDDKVQLAIQTYELVDKHIRRLDSDLARFESEIQEK 624
             K+        + K      D+KV LA QTY+LVD HI++LD  + + E   QEK
Sbjct: 63  PAKLKFSDEAIEEQKHCVRIADEKVALASQTYDLVDAHIQQLDQFMRKLEELRQEK 118


>03_06_0646 + 35260497-35262371,35262500-35262683,35262906-35263007,
            35263101-35263231,35263315-35263584,35263765-35263943,
            35264229-35264275,35264452-35264541,35264596-35264645,
            35264673-35264725,35264886-35265009,35265094-35265369,
            35265460-35265593,35265672-35265758,35265864-35265977,
            35266180-35266309
          Length = 1281

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +1

Query: 217  FEFSVKLLSFYRQSVA-RTNFIKMTSALY-LEHYLDSLQHLPIELQRNFKLMRD 372
            F+F  K +   R SV  RT+ +   S L  L+HYL SLQ+  ++  +N K +RD
Sbjct: 862  FDFDGKFVGMNRFSVMDRTSVLSWVSILIILKHYLPSLQNRILKRLQNVKRVRD 915


>09_02_0212 +
           5820866-5821031,5821172-5821224,5821512-5821639,
           5821728-5821833,5821998-5822132,5822211-5822262,
           5822383-5822447,5823984-5824090,5824596-5824792,
           5825145-5825260,5825368-5825453,5825525-5825597,
           5826886-5826977,5827069-5827207,5827275-5827369,
           5827804-5827978,5828345-5828491
          Length = 643

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 349 RNFKLMRDLDDRAHGLMRTIDLMADELLPSIPKMDEETKK--EKVNT 483
           R   L R + D A  +M T+  +ADE  P  P+ D+E ++  EKVN+
Sbjct: 531 RKRNLNRYIPDVARAIMETLGEIADESPPKRPRYDKEDEELLEKVNS 577


>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
          Length = 958

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 202 AIR*TFEFSVKLLSFYRQSVARTNFIKMTSALYLEHY--LDSLQHLPIELQRNFKLMRDL 375
           AI  T      LLSF    V       +T  LYL+H   L  L++L ++  R  +L  ++
Sbjct: 569 AIECTISMMPSLLSFQVLRVLELQGCNVTGGLYLKHIGKLRQLRYLGMKDTRVAELPMEI 628

Query: 376 DDRAHGLMRTIDL 414
            D  H  ++T+D+
Sbjct: 629 GDLVH--LQTLDV 639


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,800,270
Number of Sequences: 37544
Number of extensions: 264890
Number of successful extensions: 565
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)