Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_L03
(896 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical ... 31 0.85
U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical pr... 31 1.5
AL021572-1|CAA16516.2| 654|Caenorhabditis elegans Hypothetical ... 31 1.5
Z47067-1|CAA87328.1| 776|Caenorhabditis elegans Hypothetical pr... 30 2.0
U50309-5|AAG24135.1| 339|Caenorhabditis elegans Seven tm recept... 30 2.0
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 29 3.4
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 29 3.4
AF003150-1|AAB54215.1| 997|Caenorhabditis elegans Hypothetical ... 28 7.9
AC006617-7|AAF39768.2| 302|Caenorhabditis elegans Hypothetical ... 28 7.9
>AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical
protein K10G6.4 protein.
Length = 455
Score = 31.5 bits (68), Expect = 0.85
Identities = 23/109 (21%), Positives = 46/109 (42%)
Frame = +1
Query: 298 YLEHYLDSLQHLPIELQRNFKLMRDLDDRAHGLMRTIDLMADELLPSIPKMDEETKKEKV 477
Y + +D+++ L ELQ + L L++ D + +E+ KMD+ +KEK
Sbjct: 91 YEKFKVDTIEELQNELQDQNNQIDKLRIDRQELVKENDQLLEEIAEMSTKMDDYKRKEKA 150
Query: 478 NTIQGLFNKAKEYGDDKVQLAIQTYELVDKHIRRLDSDLARFESEIQEK 624
++ +Y + + + V L+ + +EIQ+K
Sbjct: 151 KEVE----MRMKYDQKLKDIVMNKEKRVSPRFEHLEHKIEDLHAEIQKK 195
>U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical
protein C52B9.4 protein.
Length = 558
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 236 YFHFIVKVSHAQILSK*LLLFIWSIIWTVYSTCRLNCKE 352
Y HF ++ + I S ++ +WS+I+ ++ TCR++ KE
Sbjct: 393 YRHFANTLAFSVIAS--VIFMLWSMIYHIFPTCRVDWKE 429
>AL021572-1|CAA16516.2| 654|Caenorhabditis elegans Hypothetical
protein W06H3.1 protein.
Length = 654
Score = 30.7 bits (66), Expect = 1.5
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 385 AHGLMRTIDLMADELLPSIPKMDEETKKEKVNTIQGLFNKAKEYGDDKVQL---AIQTYE 555
AH +R ID ++ +L+ S K++EE + IQ + K KE +K++L A Q
Sbjct: 320 AHAHLR-IDQLSQKLIDS--KLNEEKR------IQSIIAKKKEDLLEKLRLETNAKQAAV 370
Query: 556 LVDKHIRRLDSDLARFESEIQEK 624
+ + ++LD++LAR +EIQ+K
Sbjct: 371 IPEFDKKKLDAELARATAEIQKK 393
>Z47067-1|CAA87328.1| 776|Caenorhabditis elegans Hypothetical
protein C43C3.1 protein.
Length = 776
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 298 YLEHYLDSLQHLPIELQRNFKLMRDLDDRAHGLMRTIDLMADELLPSIPKMDEETKKEKV 477
Y+E L ++ + + LMR D+A L + L +ELL SI M+E+ KK +
Sbjct: 146 YMEDKLRLIKQNNGRIFEHINLMRMRKDQAVSLQQEYLLRKNELLHSIRNMEEDNKKIIM 205
Query: 478 N 480
N
Sbjct: 206 N 206
>U50309-5|AAG24135.1| 339|Caenorhabditis elegans Seven tm receptor
protein 90 protein.
Length = 339
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -1
Query: 230 TENSNVYLIAMSRKIFSITIHKL-NYTVLLMLFCFIIKIQNLRTL-HYNSLAIFFQAQ 63
T++S I+ +F++ + KL + ++++LFC I + LRTL HY+ Q Q
Sbjct: 186 TDDSGAKAISWPDILFAVNVVKLISICMIIVLFCGISTFRKLRTLRHYSKRTTNLQNQ 243
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 436 SIPKMDEETKKEKVNTIQGLF 498
+I K+D++TK + VNT+QG F
Sbjct: 840 NIKKIDDDTKSDLVNTLQGTF 860
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 436 SIPKMDEETKKEKVNTIQGLF 498
+I K+D++TK + VNT+QG F
Sbjct: 840 NIKKIDDDTKSDLVNTLQGTF 860
>AF003150-1|AAB54215.1| 997|Caenorhabditis elegans Hypothetical
protein T05E7.3 protein.
Length = 997
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +1
Query: 427 LLPSIPKMDEETKKEKVNTIQGLFNKAKEYGDD---KVQLAIQ-TYELVDKHIRRLDSDL 594
L ++ K+D E V TIQ + + K+ GD + L ++ +D +R L S L
Sbjct: 417 LSETVEKIDLNDTTESVETIQQIIRRVKQVGDQLGLSINLTLKDCLSTLDTDLRALMSVL 476
Query: 595 ARFESEIQE 621
+ +S I E
Sbjct: 477 SLSDSMIPE 485
>AC006617-7|AAF39768.2| 302|Caenorhabditis elegans Hypothetical
protein C39B5.3 protein.
Length = 302
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 514 YGDDKVQLAIQTYELVDKHIRRL 582
YG+D V++A Q ++V KH+ RL
Sbjct: 85 YGEDFVEIAFQDLKIVLKHVSRL 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,143
Number of Sequences: 27780
Number of extensions: 264345
Number of successful extensions: 714
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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