Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L02
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   2.8  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   2.8  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   2.8  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   2.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.7  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 190 KHFRSPSAMWKYKAEAQSASN----AITNSEDNLISSMFSANINARNGNSKSLQ 41
           K +++ ++  KY+  ++  S        + E  +ISS+ +  I+  N N K LQ
Sbjct: 48  KSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQ 101


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 190 KHFRSPSAMWKYKAEAQSASN----AITNSEDNLISSMFSANINARNGNSKSLQ 41
           K +++ ++  KY+  ++  S        + E  +ISS+ +  I+  N N K LQ
Sbjct: 48  KSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQ 101


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 190 KHFRSPSAMWKYKAEAQSASN----AITNSEDNLISSMFSANINARNGNSKSLQ 41
           K +++ ++  KY+  ++  S        + E  +ISS+ +  I+  N N K LQ
Sbjct: 48  KSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQ 101


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 190 KHFRSPSAMWKYKAEAQSASN----AITNSEDNLISSMFSANINARNGNSKSLQ 41
           K +++ ++  KY+  ++  S        + E  +ISS+ +  I+  N N K LQ
Sbjct: 48  KSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQ 101


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 190 KHFRSPSAMWKYKAEAQSASN----AITNSEDNLISSMFSANINARNGNSKSLQ 41
           K +++ ++  KY+  ++  S        + E  +ISS+ +  I+  N N K LQ
Sbjct: 281 KSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQ 334


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 117 LVIALLADCASALYFHIAEGERKCFIEEIPDD 212
           ++IA++  C+SA+ F      R    EE+P+D
Sbjct: 165 VLIAIVWICSSAISFPAIVWWRAVRTEEVPED 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,541
Number of Sequences: 438
Number of extensions: 4587
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)