Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L01
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.70 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.6  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    24   4.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   8.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   8.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 20/76 (26%), Positives = 23/76 (30%)
 Frame = +1

Query: 649 PXKGQXPVKXPGXWXFSQRPPPPXTSLXKIRPSXSKGGQTPXGXIKXXAVSPXGXPPXAP 828
           P  G+ P         S  P PP        P  S     P G     +  P   PP  P
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAI-----PGRSAPALPPLGNASRTSTPPVPTPPSLP 424

Query: 829 PPXPQPXPXTGIPVXP 876
           P  P   P +  P  P
Sbjct: 425 PSAPPSLPPSAPPSLP 440



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 814 PPXAPPPXPQPXPXTGIPV 870
           PP AP P P P P    PV
Sbjct: 470 PPAAPAPPPAPAPAPAAPV 488


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
 Frame = +1

Query: 697  SQRPPPPXTSLXKIR-PSXSKGGQTPXGXIKXXAV-SPXGXPPXAPPPX---PQPXPXTG 861
            S  PP P  S+     P  S     P   +    V +P G PP   P     P P P +G
Sbjct: 1118 SGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177

Query: 862  IPVXPFPLRG 891
            IP  P P  G
Sbjct: 1178 IPPVPKPAAG 1187



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = +1

Query: 808  GXPPXAPP--PXPQPXPXTGIPVXPFP 882
            G PP  PP    P P P  G+P  P P
Sbjct: 1206 GVPPVPPPSTAPPVPTPSAGLPPVPVP 1232



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
 Frame = +1

Query: 706  PPPPXTSLXKIRPSXSKGGQ---TPXGXIKXXAVSPXGXPPXAPP--PXPQPXPXTGIPV 870
            PP P  S     P  S        P   I        G PP  PP    P P P  G+P 
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209

Query: 871  XPFP 882
             P P
Sbjct: 1210 VPPP 1213



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
 Frame = +1

Query: 697  SQRPPPPX-TSLXKIRPSXSKGGQTPXGXIKXXAVSPXGXPPXAPPPXPQPXPXTGIPVX 873
            S  PP P  TS   +  S S     P       +  P    P   PP P P   +GIP  
Sbjct: 1038 STAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAP---SGIPPV 1094

Query: 874  PFP 882
            P P
Sbjct: 1095 PKP 1097


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = -3

Query: 882 GERXDRDSGXRXGLGX-RRGGXGGXSXGGNXXXFYXARRG 766
           G R       R G G   RGG GG S GG+   F    RG
Sbjct: 149 GSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.2 bits (50), Expect(2) = 4.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 826 PPPXPQPXPXTGIPVXP 876
           PPP P P P   +P  P
Sbjct: 357 PPPPPMPAPIYNVPNVP 373



 Score = 20.6 bits (41), Expect(2) = 4.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 808 GXPPXAPPPXPQP 846
           G  P  PPP P P
Sbjct: 353 GSRPPPPPPMPAP 365


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
 Frame = +1

Query: 706 PPPPXTSLXKIRPSXSKGGQTPXGXIKXXAVSPXGXPPXA---PPPXPQPXP 852
           PPPP  ++    P+ +     P   I      P   P  A   PPP P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 814 PPXAPPPXPQPXPXTGIPVXPFPLRGKXG 900
           P  AP P P P P  G P  P P  G  G
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 817 PXAPPPXPQPXPXTGIPVXP 876
           P  PPP P P P    P  P
Sbjct: 3   PAPPPPPPAPAPAAAAPAPP 22


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 808 GXPPXAPPPXPQPXPXTGIP 867
           G P  APPP P P P   +P
Sbjct: 800 GNPFKAPPPAPLPPPAPPLP 819


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +1

Query: 706  PPPPXTSLXKIRPSXSKGGQTPXGXIKXXAVSPXGXPPXAPPPXPQPXP 852
            P PP      ++ S +         I     S  G  P  PPP P P P
Sbjct: 905  PTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,046
Number of Sequences: 5004
Number of extensions: 16126
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)