Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K24
         (1192 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734...    59   6e-09
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391...    59   8e-09
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832...    44   2e-04
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911     39   0.007

>03_03_0210 +
           15470680-15470715,15473088-15473342,15473417-15473499,
           15473617-15473698,15474886-15474939
          Length = 169

 Score = 59.3 bits (137), Expect = 6e-09
 Identities = 24/63 (38%), Positives = 35/63 (55%)
 Frame = +1

Query: 160 PXQNXTRHCYQXXVDFHRLPXSSXAKNTXHAYYFKRVYRSLCPNEWVDXWDXXRPEGXFD 339
           P  N TRHC+   V++HR   ++  ++      F + YRSLCP EWV+ W+  R  G F 
Sbjct: 108 PTTNQTRHCFTRYVEYHRC-VAAKGEDAPECDKFAKYYRSLCPGEWVERWNEQRENGTFP 166

Query: 340 GXM 348
           G +
Sbjct: 167 GPL 169


>07_03_1305 -
           25638531-25638584,25638909-25638990,25639087-25639169,
           25639252-25639515,25639984-25640060,25640183-25640277,
           25640953-25641065
          Length = 255

 Score = 58.8 bits (136), Expect = 8e-09
 Identities = 22/63 (34%), Positives = 35/63 (55%)
 Frame = +1

Query: 160 PXQNXTRHCYQXXVDFHRLPXSSXAKNTXHAYYFKRVYRSLCPNEWVDXWDXXRPEGXFD 339
           P  N TRHC+   +++HR   ++  +       F + YRSLCP+EW++ W+  R  G F 
Sbjct: 194 PTTNQTRHCFTRYIEYHRC-VAAKGEGAPECEKFAKYYRSLCPSEWIERWNEQRENGTFP 252

Query: 340 GXM 348
           G +
Sbjct: 253 GPL 255


>04_04_0390 -
           24882572-24882577,24882928-24883009,24883089-24883200,
           24883411-24883441
          Length = 76

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 160 PXQNXTRHCYQXXVDFHRLPXSSXAKNTXHAYYFKRVYRSLCPNEW 297
           P  N TRHC+   +++HR   ++  + T     F + YRSLCP EW
Sbjct: 31  PTTNQTRHCFTRYIEYHRC-VNAKGEATADCEKFAKYYRSLCPAEW 75


>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
          Length = 51

 Score = 39.1 bits (87), Expect = 0.007
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 259 FKRVYRSLCPNEWVDXWDXXRPEGXFDGXM 348
           + + YRSLCP EW++ W   R  G F G +
Sbjct: 22  YAKCYRSLCPGEWIERWKEQRANGTFAGPL 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,251,489
Number of Sequences: 37544
Number of extensions: 146165
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3631571424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)