Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_K23
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 44 2e-04
02_03_0404 + 18648632-18648669,18649319-18649379,18649449-186494... 40 0.004
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 38 0.014
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 38 0.014
04_04_0323 - 24392043-24393021,24393135-24393544 36 0.058
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009 35 0.077
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 33 0.31
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 30 2.2
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37... 30 2.9
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 29 5.1
03_01_0446 - 3436889-3437146 29 5.1
04_03_0151 + 11905926-11906618 28 8.8
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 44.0 bits (99), Expect = 2e-04
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Frame = +2
Query: 362 STFNKRKCYDAARSTSRRCTGVRASPSASSQQLKRPKYLHPYTQPN*TNRELWSPTIK*H 541
+T + Y AR+ S + + + S SS+ +R YL PN + +LWS +
Sbjct: 15 ATLGLIRSYSHARNYSSQLSALIPIGSQSSKLTRRRYYL-----PNASPYQLWSRSFASD 69
Query: 542 PSTSRIPWLVEQDVTTPSFPDSVSEGDV-KLDKKVGDSVAADEVVLEIETDKTAIPVMAP 718
+ + P +SV++G + KK GD V ADE + +IETDK I V +P
Sbjct: 70 NGD-------QVEAVVPFMGESVTDGTLANFLKKPGDRVEADEPIAQIETDKVTIDVASP 122
Query: 719 GHG 727
G
Sbjct: 123 EAG 125
>02_03_0404 +
18648632-18648669,18649319-18649379,18649449-18649476,
18649787-18649861,18649929-18649984,18650085-18650129,
18650224-18650475,18650586-18650680,18651114-18651204,
18651356-18651466,18651556-18651750,18651827-18652018
Length = 412
Score = 39.5 bits (88), Expect = 0.004
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 578 DVTTPSFPDSVSEGDVKLD-KKVGDSVAADEVVLEIETDKTAIPVMAPGHG 727
D P +S+++G + KK GD V ADE + +IETDK + V +P G
Sbjct: 47 DAVVPFMGESITDGTLATFLKKPGDRVEADEPIAQIETDKVTMDVASPEAG 97
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 37.5 bits (83), Expect = 0.014
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +2
Query: 575 QDVTTPSFPDSVSEGDV-KLDKKVGDSVAADEVVLEIETDKTAI 703
Q++ PS +++EG++ + KK GD V+ EV+ E+ETDK +
Sbjct: 119 QEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATV 162
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 37.5 bits (83), Expect = 0.014
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +2
Query: 575 QDVTTPSFPDSVSEGDV-KLDKKVGDSVAADEVVLEIETDKTAI 703
Q++ PS +++EG++ + KK GD V+ EV+ E+ETDK +
Sbjct: 1622 QEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATV 1665
>04_04_0323 - 24392043-24393021,24393135-24393544
Length = 462
Score = 35.5 bits (78), Expect = 0.058
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 720 PGAMTGMAVLSVSISRTTSSAATLSPTFLSNLTSPSETESGKLGVVTSCSTSQGIR 553
PGA + SV ++ +SA + SPT S S S + S S ST+ G+R
Sbjct: 221 PGAASCFPFCSVGATKPAASADSPSPTSTSRTASASSSSSSSTATTASSSTAAGVR 276
>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
Length = 431
Score = 35.1 bits (77), Expect = 0.077
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -3
Query: 690 SVSISRTTSSAATLSPTFLSNLTSPSETESGKLGVVTSCSTSQGIREVDGCYL 532
SV + T+++A T + T S+ TSP S L + + IR++ GCYL
Sbjct: 126 SVMTAATSATATTTTTTTSSSATSPPSALSSPLSSIGGSFRAMQIRKLSGCYL 178
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 33.1 bits (72), Expect = 0.31
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 363 VRSISENATT--LLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSS 536
+++ SEN T +L + D +P HP N NAQ + +PT +SG P SS
Sbjct: 401 LQTASENPPTFAVLSSRSDVLPEDQKEHPAA--NLNAQIESPEDHKEVDPTTASGIPSSS 458
Query: 537 SIHPLHESPGL 569
+ GL
Sbjct: 459 GVEDNVNKEGL 469
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 581 VTTPSFPDSVSEGDV-KLDKKVGDSVAADEVVLEIETDKTAI 703
V P+ ++++G++ K K+ G+ + +V+ EIETDK +
Sbjct: 154 VGMPALSPTMNQGNIAKWRKQEGEKIEVGDVICEIETDKATL 195
>06_01_0037 -
369498-369568,369668-369760,369889-369991,370061-370156,
370227-370293,370379-370446,370606-370681,370890-370975,
371065-371150,371337-371409,371490-371735,371845-371937,
372045-372119,372496-372540,372631-372708,372805-372921,
373865-373894
Length = 500
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 635 KKVGDSVAADEVVLEIETDKTAI 703
KK GD V+ EV+ E+ETDK +
Sbjct: 98 KKEGDKVSPGEVLCEVETDKATV 120
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 696 VLSVSISRTTSSAATLSPTF-LSNLTSPSETESGKLGVVTSCSTSQGIREVDGCYLIVGD 520
V ++S+ +A S +SN++S S E + G+V S TS G +E DG I G
Sbjct: 149 VSTISVGSKVKAANVSSKDLNVSNISSKSTKEDAEEGIVPSGCTSTG-KEEDGRSCIGGS 207
Query: 519 QSS 511
+++
Sbjct: 208 EAA 210
>03_01_0446 - 3436889-3437146
Length = 85
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 647 DSVAADEVVLEIETDKTAIPVMAPGHGCHQG 739
D VAA E++L++ +P PG+ CHQG
Sbjct: 45 DGVAAGELILQV---LKVVPSGPPGNDCHQG 72
>04_03_0151 + 11905926-11906618
Length = 230
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 378 ENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTR 491
+ +TLL HP +S P HP V++SNA + R
Sbjct: 148 QRGSTLLRQHPRQA-SSAPGHPAVVSSSNAPRIAPIQR 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,747,228
Number of Sequences: 37544
Number of extensions: 482894
Number of successful extensions: 1352
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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