Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K23
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        25   0.94 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   2.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   8.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   8.8  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = -3

Query: 708 TGMAVLSVSISRTTSSAATLSPTFLSNLTSPSETESGKLGVVTSCSTSQGIREVDGCY 535
           T  A  S+  S + ++ A  +  +     SPS T S      +S STS   R     Y
Sbjct: 32  TSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMY 89


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +1

Query: 184 VYVQLFHNADITSSVR*CLT----NNIKKY*HKPVMRILCNHILFVK*LHRTLIGVVYLF 351
           VY+++F N  +  S+R  LT     N+K Y   P+ R +C+  L +     T   +V+L+
Sbjct: 138 VYIRIFPNGSVLYSIRISLTLSCPMNLKLY---PLDRQVCS--LRMASYGWTTDDLVFLW 192

Query: 352 VKGKYVQ*AKML 387
            +G  VQ  K L
Sbjct: 193 KEGDPVQVVKNL 204


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +1

Query: 184 VYVQLFHNADITSSVR*CLT----NNIKKY*HKPVMRILCNHILFVK*LHRTLIGVVYLF 351
           VY+++F N  +  S+R  LT     N+K Y   P+ R +C+  L +     T   +V+L+
Sbjct: 138 VYIRIFPNGSVLYSIRISLTLSCPMNLKLY---PLDRQVCS--LRMASYGWTTDDLVFLW 192

Query: 352 VKGKYVQ*AKML 387
            +G  VQ  K L
Sbjct: 193 KEGDPVQVVKNL 204


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 681 SRRTKPPFRSWRP 719
           SRRT PP   W+P
Sbjct: 411 SRRTSPPPEDWKP 423


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 473 YLHPYTQPN*TNRELWSPTIK 535
           YL+  T  N   R  WS T+K
Sbjct: 378 YLYQNTMSNNNQRTEWSATVK 398


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 473 YLHPYTQPN*TNRELWSPTIK 535
           YL+  T  N   R  WS T+K
Sbjct: 416 YLYQNTMSNNNQRTEWSATVK 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,903
Number of Sequences: 438
Number of extensions: 4719
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)