Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K21
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    31   1.4  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    31   1.4  
Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical pr...    30   2.5  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       30   2.5  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 341  SIEKSCRICITSSYEMSNIFNEKHPEILEKIEFCT 445
            S+E +CR   TS  E+S +   KHP ++  +  CT
Sbjct: 1758 SMEFACRAYCTSRQELSLLSRMKHPNVIGLVGVCT 1792


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 341  SIEKSCRICITSSYEMSNIFNEKHPEILEKIEFCT 445
            S+E +CR   TS  E+S +   KHP ++  +  CT
Sbjct: 1756 SMEFACRAYCTSRQELSLLSRMKHPNVIGLVGVCT 1790


>Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical
           protein R53.3a protein.
          Length = 543

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 299 EEYDGNLHNKIQLLSIEK--SCRICITSSYEMSNIFNEKHPEILEKIEFCTGILLKPEDG 472
           EE   +L N I L   ++  S + C  SS E SN+ N     I E  E   G    P DG
Sbjct: 101 EEDQDDLENLILLKDEDRPDSTQSCTKSSSEDSNL-NGFEEYIREHGELVPG--QTPPDG 157

Query: 473 LPAHICGMCSKNLTVAFDFK 532
             +H CG+C K+ + A   K
Sbjct: 158 --SHKCGVCPKSFSSASGLK 175


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 299 EEYDGNLHNKIQLLSIEK--SCRICITSSYEMSNIFNEKHPEILEKIEFCTGILLKPEDG 472
           EE   +L N I L   ++  S + C  SS E SN+ N     I E  E   G    P DG
Sbjct: 101 EEDQDDLENLILLKDEDRPDSTQSCTKSSSEDSNL-NGFEEYIREHGELVPG--QTPPDG 157

Query: 473 LPAHICGMCSKNLTVAFDFK 532
             +H CG+C K+ + A   K
Sbjct: 158 --SHKCGVCPKSFSSASGLK 175


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
           protein F41C3.6 protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +2

Query: 206 KIMLRATYYNL*NDYLLKHNLIRLTA*YKMIEEYDGNLHNKIQLLSIEK 352
           K +L++  +N+ NDY L H  +RL + +  +  Y  +    +++  +EK
Sbjct: 28  KNLLKSILHNIENDYFLAHQKVRLYSSHNFVMLYSSSKILMMEIDDLEK 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,380,200
Number of Sequences: 27780
Number of extensions: 294878
Number of successful extensions: 684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)