Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K20
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    29   1.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   3.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   3.5  

>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 224 EIMPLTADVAAQQVQERLRSLH-RLIYDIEAERSRNEQ 334
           E++    D+ ++ + E LR    +L+Y+IEAE  +N+Q
Sbjct: 692 EVLDEEVDLVSEPIPEPLRERQSQLLYEIEAEECQNKQ 729


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 703 GSGDVPRVGRHRSAQRRRPLP 641
           G  + PRV R+ S  RR+PLP
Sbjct: 558 GDEESPRVSRNTSLARRKPLP 578


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = -2

Query: 754 QXSSLSEXPHERSD----GVPGSGDVPRVGRHRSAQRRRPLPRAPHVQRQRLRGTQEQLH 587
           + S+    PH R      G  G   + R  RH SA+ R+ LP    + +  L   +EQ  
Sbjct: 37  ENSTTKNFPHSRHTSTVAGTEGGSSLSR--RHTSAESRKALPNQQQLAQSGLLNKEEQQS 94

Query: 586 QRPATDRLLVTRVTSLNSTFI 524
            + +   +    V  ++S+ I
Sbjct: 95  LKRSDTSVFPKAVRKVSSSKI 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,111
Number of Sequences: 5004
Number of extensions: 52225
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)