Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K20
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0245 + 13452864-13453096,13453169-13453223,13453316-13453438     31   0.92 
05_01_0169 - 1170614-1172098                                           31   1.6  
03_03_0069 + 14252184-14252810,14252876-14253523                       29   4.9  
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412...    29   4.9  
04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861...    29   6.5  
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468...    28   8.5  

>06_02_0245 + 13452864-13453096,13453169-13453223,13453316-13453438
          Length = 136

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = +3

Query: 609 RKRCRCTWGAR--GSGRLRCAERCRPTRGTSPDPGTPSLRSCGXSD 740
           R RCRC W  R  G G    A   RP   T P    P  R  G  D
Sbjct: 63  RYRCRCHWETRDKGLGAALVAMAARPLDSTPPAEEKPHWRRSGDGD 108


>05_01_0169 - 1170614-1172098
          Length = 494

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -3

Query: 411 WEDPDESSALEGDPVDFSALSMASMHCS---LRDLSASIS*INLCNDLNLSCTCCAATSA 241
           W D DE     GD  DF+ L+  S H        + A++  +       LSC CC   +A
Sbjct: 141 WVDADELLPFRGDGGDFALLAGQSAHAMPALTASVDAALGEVARRVAAGLSCCCCCDGAA 200

Query: 240 V 238
           V
Sbjct: 201 V 201


>03_03_0069 + 14252184-14252810,14252876-14253523
          Length = 424

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 627 CSGNVCAALRSSFISAPQPIVSL 559
           CSG V A+L  SF+SA +P+ S+
Sbjct: 99  CSGAVAASLAVSFVSASEPVRSM 121


>01_01_0562 +
           4126368-4128196,4128517-4128715,4128827-4128886,
           4129129-4129233,4129987-4130127,4130223-4130285,
           4130925-4131152,4131250-4131333,4132000-4132157,
           4132252-4132777,4133641-4133700,4133904-4134026,
           4134906-4135181,4135282-4135347,4135500-4135631,
           4135977-4136798,4137026-4137306,4137564-4137796,
           4138022-4138260,4138367-4138558,4138808-4139080,
           4139186-4139332
          Length = 2078

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -2

Query: 649 PLPRAPHVQRQRLRGTQEQLHQRPATDRLLVTRVTSL--NSTFILNCT 512
           P P  PH Q Q L  T+ Q  Q P   + LV  +  L     F++ C+
Sbjct: 64  PAPHHPHSQHQPLLPTRRQQQQPPPPYQALVASLAPLWREGLFLVRCS 111


>04_04_0487 -
           25585229-25585540,25585627-25585745,25586029-25586194,
           25586295-25586427,25586527-25586618,25586739-25586925,
           25587183-25587271,25587318-25587379,25587462-25587567,
           25587754-25588052,25588181-25588288,25588369-25588439,
           25588792-25588871
          Length = 607

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 736 EXPHERSDGVPGSGDVPRVGRHRSAQ 659
           E P+E S  V GS D PR+GR R+ Q
Sbjct: 478 EEPYEISSDVHGSFDGPRMGRLRAMQ 503


>08_01_0539 +
           4679392-4681282,4682060-4682104,4682403-4683560,
           4683834-4684204,4684290-4684835,4684927-4685027,
           4685117-4685933,4686025-4686213,4686313-4686384,
           4686477-4686587,4686647-4686652,4686694-4686794,
           4687714-4687813,4687891-4687986,4688157-4688273,
           4688367-4688492,4688566-4688619,4688745-4688992,
           4689087-4689195,4689284-4689583,4689799-4689963
          Length = 2240

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 760 NIQXSSLSEXPHERSDGVPGSGDVPRVGRHRSAQRRRPLPR 638
           N   S ++   HERS G+ G     R+   RS  R  P PR
Sbjct: 246 NRDISPMTRDRHERSPGILGRFPHDRLRHDRSPSRLEPSPR 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,396,895
Number of Sequences: 37544
Number of extensions: 358810
Number of successful extensions: 1366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)