Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K20
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    31   1.4  
AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical...    30   1.9  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AF078792-1|AAC26947.2|  352|Caenorhabditis elegans Serpentine re...    29   5.8  
Z49068-8|CAA88861.1|  540|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U25697-1|AAA92842.1|  540|Caenorhabditis elegans CCT-4 protein.        28   7.6  

>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +2

Query: 59  IKQLSLNWAFYFVVCDFIKFTNGYYTKLVQNHH----FGNSEYQLDPHYIFELETIEYCE 226
           ++ L ++W     V   I  T+GYYT +  + H     GN     DP Y F        E
Sbjct: 590 VRHLPVDWMTLTEVLRLIFETSGYYTGMATHRHRLYARGNFRGYEDPAYEFRTRHPGIME 649

Query: 227 IMPLTADVAAQQVQERLRSLHRLIYDI 307
            +  T  V   +  ERL  +  LIY +
Sbjct: 650 KL-RTLTVFDLEAPERLEIVKTLIYQL 675


>AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical
           protein Y113G7B.9 protein.
          Length = 295

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 280 PQSFLYLLCSNVSCERHYFTIFDSFQLKYIVWIQLILTITEMM---ILHQFGIVTISKFN 110
           P++ L   C+   C  HY+ I  S     IV   LIL+I  +M   + HQ     ISK N
Sbjct: 155 PKTCLVFGCATNQCFFHYWLIQRSIIFSLIVLFSLILSIKLLMMNSVKHQQSNNQISKAN 214

Query: 109 KV 104
           ++
Sbjct: 215 RL 216


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 700 SGDVPRVGRHRSAQRRRPLPRAPHVQRQRLRGTQEQLHQ 584
           SG+V + GR   A+ R    R  H   +R  G++EQ H+
Sbjct: 331 SGEVEKRGRGEKAEGRDEQERRSHGSEERRGGSEEQPHR 369


>U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical
           protein K08B5.1 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 320 TSPLLYHKSICVMTSIFPVLVVQQRQL*EALFHNIR*FPTQIYSVDPADTHYYRNDDFAP 141
           T   +++++     ++  +LVV Q  +    F NIR  P Q+Y   P + H Y+   F  
Sbjct: 135 TVATIFYRNYSPKPTLGSILVVVQVLVSSIPFWNIR-LPKQMYPYSPPELHDYQLYYFIS 193

Query: 140 IW 135
           +W
Sbjct: 194 MW 195


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
           protein C27H6.1 protein.
          Length = 1657

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 128 YYTKLVQNHHFGNSEYQLDPH 190
           Y  +  QNH + NS+YQ+D H
Sbjct: 602 YQQEYYQNHKYENSQYQVDQH 622


>AF078792-1|AAC26947.2|  352|Caenorhabditis elegans Serpentine
           receptor, class h protein40 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/75 (22%), Positives = 30/75 (40%)
 Frame = -2

Query: 280 PQSFLYLLCSNVSCERHYFTIFDSFQLKYIVWIQLILTITEMMILHQFGIVTISKFNKVT 101
           P  F  ++C        YF    +  + + VW+ L +      ILH F     +  +  +
Sbjct: 79  PMMFWSVVCGYTLGISKYFINSKNILMYFGVWLMLAVLAMIAAILHLFEFRHQAVVSNNS 138

Query: 100 NYKIESPIKRELFYF 56
            + +  P  R +FYF
Sbjct: 139 KFVMRRPWTRRIFYF 153


>Z49068-8|CAA88861.1|  540|Caenorhabditis elegans Hypothetical
           protein K01C8.10 protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 134 TKLVQNHHFGNSEYQLDPHYIFELETIEYCEIMPLTADVAA-QQVQERLRSLHRL 295
           T+L  NH  GNS Y ++    +  + +E   + PL    +A +Q  E +RS+ ++
Sbjct: 478 TELRNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKI 532


>U25697-1|AAA92842.1|  540|Caenorhabditis elegans CCT-4 protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 134 TKLVQNHHFGNSEYQLDPHYIFELETIEYCEIMPLTADVAA-QQVQERLRSLHRL 295
           T+L  NH  GNS Y ++    +  + +E   + PL    +A +Q  E +RS+ ++
Sbjct: 478 TELRNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKI 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,679,405
Number of Sequences: 27780
Number of extensions: 305806
Number of successful extensions: 1055
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)