Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K20
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.6  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   3.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   8.5  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 787 AGNQVTTSANIQXSSLSEXPHERSDGVPGSGDVPRVGRH 671
           +   V T   +  S +    H RS G+P   D+P VG +
Sbjct: 320 SAGSVNTPQLLMLSGIGPKEHLRSLGIPVVVDLPGVGEN 358


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 206 PTQIYSVDPADTHYYRNDDFAPIWYSNH 123
           P  I   +PA  +YY N D A I  ++H
Sbjct: 2   PILIPHRNPASANYYENKDGARIVKASH 29


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 479 VVFPLALQLLNLIYINF 429
           +VFP+A  + N++Y +F
Sbjct: 450 IVFPVAFIIFNILYWSF 466


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 709 VPGSGDVPRVGRHRSAQRRRPLP 641
           VP SG++ + G     + + PLP
Sbjct: 23  VPNSGELFKAGSAEQPKEQEPLP 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,128
Number of Sequences: 438
Number of extensions: 3697
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)