Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K19
         (902 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   7.3  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    23   9.6  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    23   9.6  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           23   9.6  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 598  IQFNVI*LSE-LDTKTQNLSMMSQKYRKDATYLNTKSMLVKVTA 470
            +Q+ +  L E L+    NLS++ +  +K   YL   ++L ++TA
Sbjct: 1068 LQYQISILEEKLNANKPNLSVIDEFLKKREAYLMRVAVLEEITA 1111


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +3

Query: 510 VASFRYFCDIIDRFCVFV 563
           ++ +++   ++DRFC+FV
Sbjct: 451 ISDWKFAAMVVDRFCLFV 468


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +3

Query: 510 VASFRYFCDIIDRFCVFV 563
           ++ +++   ++DRFC+FV
Sbjct: 451 ISDWKFAAMVVDRFCLFV 468


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 520 SGTSATSSIGFASSCPVL 573
           S TSAT+ +G  S CP +
Sbjct: 238 SPTSATNGVGEESGCPTI 255


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,124
Number of Sequences: 2352
Number of extensions: 12013
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 97574436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)