Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K17
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    31   1.1  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    31   1.1  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    31   1.1  
Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z80214-1|CAB02262.1|  500|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z72517-6|CAA96696.3|  261|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
           defective protein 19,isoform a protein.
          Length = 1783

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +2

Query: 428 LHFYTSTISQFGLCLFFVIIIDCI*STYLLF*HFDLNGETAQVIPVVVSLLKLFIILRLY 607
           L F T T SQF     FV+I   +   ++L  +FDL       +     LL++F + + +
Sbjct: 527 LGFTTYTTSQFNRFDCFVVISSIL--EFVLV-YFDLMKPLGVSVLRSARLLRIFKVTKYW 583

Query: 608 T*LRNDKASLLN 643
           T LRN  +SLLN
Sbjct: 584 TSLRNLVSSLLN 595


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
           defective protein 19,isoform b protein.
          Length = 1877

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +2

Query: 428 LHFYTSTISQFGLCLFFVIIIDCI*STYLLF*HFDLNGETAQVIPVVVSLLKLFIILRLY 607
           L F T T SQF     FV+I   +   ++L  +FDL       +     LL++F + + +
Sbjct: 527 LGFTTYTTSQFNRFDCFVVISSIL--EFVLV-YFDLMKPLGVSVLRSARLLRIFKVTKYW 583

Query: 608 T*LRNDKASLLN 643
           T LRN  +SLLN
Sbjct: 584 TSLRNLVSSLLN 595


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
           calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +2

Query: 428 LHFYTSTISQFGLCLFFVIIIDCI*STYLLF*HFDLNGETAQVIPVVVSLLKLFIILRLY 607
           L F T T SQF     FV+I   +   ++L  +FDL       +     LL++F + + +
Sbjct: 527 LGFTTYTTSQFNRFDCFVVISSIL--EFVLV-YFDLMKPLGVSVLRSARLLRIFKVTKYW 583

Query: 608 T*LRNDKASLLN 643
           T LRN  +SLLN
Sbjct: 584 TSLRNLVSSLLN 595


>Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical
           protein F54F7.4 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +1

Query: 316 FNQFTLELFIVWNIT----HVLKDVDKSIQNFVKRVIIKNTFTFLYVYNLAIWIMSVFCY 483
           F++F +  FIVW       + +  +    Q  V  ++I    + L+V+ + +WI+ V C+
Sbjct: 15  FHRFVVYFFIVWKTVFTEFYSMTHILHLCQCCVSYLVIL-VASILFVFKMQVWILLVCCF 73

Query: 484 N 486
           N
Sbjct: 74  N 74


>Z80214-1|CAB02262.1|  500|Caenorhabditis elegans Hypothetical
           protein C27D8.2 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 331 LELFIVWNITHVLKDVDKSIQNFVKRVIIK 420
           L+  IV ++ HV  D +KS+QNF    I K
Sbjct: 148 LQTMIVCDVAHVNPDTEKSLQNFAIESIEK 177


>Z72517-6|CAA96696.3|  261|Caenorhabditis elegans Hypothetical
           protein T28F4.6 protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 28  RESLRFYIKLFLIK-YEKMRKILVFLVLQYYQAREVIRC 141
           R S   YI LFL K  E    +    VLQ Y  RE+I+C
Sbjct: 210 RVSFNVYIHLFLKKALENEGMLNTTKVLQIYSIREIIQC 248


>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 283 ATNHS*IRF-IAFNQFTLELFIVWNITHVLKDVDKSIQNFVKRV 411
           A  HS  R+ + FN   ++  IV  ++ +L D+DK + N+V RV
Sbjct: 139 AVAHSLARYKVKFNPEKIDTMIVQAVS-LLDDLDKELNNYVMRV 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,112,726
Number of Sequences: 27780
Number of extensions: 368712
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)