Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K16
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...   102   3e-22
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...   102   3e-22
Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical p...    32   0.47 
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical p...    30   2.5  
Z83116-6|CAB05565.2|  302|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    29   5.8  
Z82052-8|CAD89751.2|  325|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AC006761-5|AAF60550.3|  425|Caenorhabditis elegans Hypothetical ...    28   7.7  

>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score =  102 bits (245), Expect = 3e-22
 Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
 Frame = +3

Query: 294 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 473
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 474 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 644
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 645 RVHYH-DPGDGVWGEHEIDHILFFQ 716
           +  Y  +  +  WGEHE+D+ L  +
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILR 164


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score =  102 bits (245), Expect = 3e-22
 Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
 Frame = +3

Query: 294 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 473
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 474 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 644
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 645 RVHYH-DPGDGVWGEHEIDHILFFQ 716
           +  Y  +  +  WGEHE+D+ L  +
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILR 164


>Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical
           protein C01G10.4 protein.
          Length = 72

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 196 SFLTNIFVCMNFTELHFYTYKYNINNNVSRDLRSVKSFTFYDNRPNNLY 50
           SF+ ++ V ++ T   +YTY Y  NNN   +     ++ +Y N  NN Y
Sbjct: 5   SFIASLLVLLS-TANAYYTYYYYPNNNNYNNNNGYTTYYYYPNNNNNGY 52


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 196 SFLTNIFVCM-NFTELHFYTYKYNINNNVSRDLRSVKSF 83
           S L  IF+C+ +++ L FY Y +N+N +  +DL  V+ F
Sbjct: 18  SELILIFICIVSYSTLPFYIYVHNLNRHREKDLLIVQLF 56


>Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical
           protein T26E4.15 protein.
          Length = 302

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 268 VAGFTGSEAKNLFSTLRVLHSDLVSFLTNIFVCM-NFTELHFYT 140
           + GFTG    NLF  L  LHS+ +  + NI +C+  F +L  +T
Sbjct: 17  IVGFTG----NLFMVLVTLHSNKLRSICNILICVCCFCDLLLFT 56


>Z83116-6|CAB05565.2|  302|Caenorhabditis elegans Hypothetical
           protein M01B2.7 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 268 VAGFTGSEAKNLFSTLRVLHSDLVSFLTNIFVCM-NFTELHFYTYKYNINNNVSRDLRSV 92
           + GFTG    NL   L  LHS+ +  + NI +C+  F +L  +T    I   VS    S 
Sbjct: 17  IVGFTG----NLLMVLVTLHSNKLRSICNILICVCCFCDLLLFTDV--IAFVVSMFTPST 70

Query: 91  KSFTFYDNRP 62
           + F FY + P
Sbjct: 71  QEFCFYISIP 80


>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 181 IFVCMNFTELHFYTYKYNINNNVSRDLRSVKSF 83
           IF  +++  L FY Y +N+N +  +DL  V+ F
Sbjct: 24  IFFFISYLTLPFYIYVHNLNRSKEKDLPFVQLF 56


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
            interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 30/124 (24%), Positives = 47/124 (37%)
 Frame = -2

Query: 388  TL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPSLSRVAGFTGSEAKNLFSTLRVLH 209
            TL  S F A      F +T R +  S  +     +  ++ +       A+NL  ++ V  
Sbjct: 812  TLVRSTFDAQEFTQEFGATWRDVIESTGNDENARKARIAEICQKKTIGARNLMDSVNV-- 869

Query: 208  SDLVSFLTNIFVCMNFTELHFYTYKYNINNNVSRDLRSVKSFTFYDNRPNNLYRNFPXIS 29
            S  +      F C N     F + K        R L  V   TF+ +RP   ++NF   S
Sbjct: 870  SGGLPLKNRFFFCENLNFPGFLSLKLIFPQFFDRKL--VGGLTFWISRPPKKFQNFKLYS 927

Query: 28   R*SR 17
            +  R
Sbjct: 928  KEKR 931


>Z82052-8|CAD89751.2|  325|Caenorhabditis elegans Hypothetical
           protein T25E12.13 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 208 SDLVSFLTNIFVCMNFTELHFYTYKYNINNNVSRDLRSVKSF 83
           S +V+ +   F+  +++ L FY Y +N+N +  +DL  V+ F
Sbjct: 17  SSMVALVAFFFI--SYSTLPFYIYVHNLNRSKEKDLPFVQLF 56


>AC006761-5|AAF60550.3|  425|Caenorhabditis elegans Hypothetical
           protein Y41G9A.3 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 165 ILLNYTFTLTNII*ITMYPEIFVQLRVS-LFMIIDRTIFTGI 43
           +  NYT TL ++I      EIF+   V  +FM+ DRTI  GI
Sbjct: 362 VTANYTTTLWSLI------EIFIDKNVHRIFMVDDRTILKGI 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,998,376
Number of Sequences: 27780
Number of extensions: 441416
Number of successful extensions: 1136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)