Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K13
         (930 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   5.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   9.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   9.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 663 TLPTVLYPPQNYHLHHHVTNISKHPH 586
           T+   + PP  +H HHH T   +H H
Sbjct: 342 TMGPTMGPP--HHHHHHQTQSLQHLH 365


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 29  GNPQDFEISTXMGRKILKIKAKLKNPSQDYLNETQC 136
           G+P+  E ++    K  KIK  +  PS + LN T+C
Sbjct: 321 GSPRSPESNSRCSVKREKIKISVSYPSTETLN-TKC 355


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 239 ADFEHREKVAIQYHISALNKSRLKYCVFF 325
           A+ + RE++   +   AL   R   CVFF
Sbjct: 409 AEQDRRERMEFDWKQVALVSDRALLCVFF 437


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 501 NNIRHLRQYVYGIVALGFCPLLYCVLYYCGD 593
           NN  + ++  Y I+ +   P+   V  YCG+
Sbjct: 344 NNYNNYKKLYYNIINIEQIPVPVPVPIYCGN 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,211
Number of Sequences: 438
Number of extensions: 4333
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)