Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K11
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     32   0.72 
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    28   8.9  

>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
 Frame = +2

Query: 650 PRPSGWGXRXHPPQXXXXXFPQX-RGXPXEKNXXPKXPXKAXNXKRXXWWXFQXPPPXXP 826
           P+P   G +  PP+      P+  +  P  K   PK   K        WW    P P  P
Sbjct: 178 PKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGPKPKPGPPQPWWPIPFPKPPCP 237

Query: 827 P 829
           P
Sbjct: 238 P 238



 Score = 29.1 bits (62), Expect = 5.1
 Identities = 21/76 (27%), Positives = 22/76 (28%)
 Frame = +1

Query: 613 GPXPVPXXXXXLPPXXRLGEXXXPPPRGXXRFPXNXGXTPXKKLXTXXAXKSXXPXKXRL 792
           GP P P      PP  + G    PP  G    P   G  P  K           P K   
Sbjct: 160 GPKPKPKPS---PPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGP 216

Query: 793 VXFPXPPPXXXPXXXP 840
              P PP    P   P
Sbjct: 217 KPKPGPPQPWWPIPFP 232


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
 Frame = +1

Query: 649 PPXXRLGEXXXPPPRGXXRFPX----NXGXTPXKKLXTXXAXKSXXPXKXRLVXFPXPPP 816
           PP   +     PPP    R P     + G TP  K  T  + +   P        P PPP
Sbjct: 299 PPVAAIAAPPAPPPARSRRTPPRTRFSTGSTPDTKQVTSPSPRPVQPSNAPPPPPPPPPP 358

Query: 817 XXXP 828
              P
Sbjct: 359 PPPP 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,695,922
Number of Sequences: 37544
Number of extensions: 286770
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)