Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K11
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    33   0.28 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    33   0.28 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    33   0.28 
Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    28   8.0  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/55 (36%), Positives = 20/55 (36%)
 Frame = +3

Query: 666 GGXXXTPPKGGXPVSXKXGGXPXKKTXXXXGXXKPXTXKGPXGGFSXAPPXXXPP 830
           GG    PP GG P     GG P        G   P     P GGF   PP   PP
Sbjct: 740 GGPPPPPPPGGLPPIS--GGPPPPPPPP--GGCPPPPPPPPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/55 (36%), Positives = 20/55 (36%)
 Frame = +3

Query: 666 GGXXXTPPKGGXPVSXKXGGXPXKKTXXXXGXXKPXTXKGPXGGFSXAPPXXXPP 830
           GG    PP GG P     GG P        G   P     P GGF   PP   PP
Sbjct: 740 GGPPPPPPPGGLPPIS--GGPPPPPPPP--GGCPPPPPPPPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/55 (36%), Positives = 20/55 (36%)
 Frame = +3

Query: 666 GGXXXTPPKGGXPVSXKXGGXPXKKTXXXXGXXKPXTXKGPXGGFSXAPPXXXPP 830
           GG    PP GG P     GG P        G   P     P GGF   PP   PP
Sbjct: 323 GGPPPPPPPGGLPPIS--GGPPPPPPPP--GGCPPPPPPPPPGGFKGGPPPPPPP 373


>Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 617 PXPFPRXXXXC-PRPSGWGXRXHPPQXXXXXFPQ 715
           P P+P+    C P P G+  +  PPQ     +PQ
Sbjct: 132 PQPYPQRTGGCLPSPRGYENQPQPPQPQQQQYPQ 165


>Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 617 PXPFPRXXXXC-PRPSGWGXRXHPPQXXXXXFPQ 715
           P P+P+    C P P G+  +  PPQ     +PQ
Sbjct: 132 PQPYPQRTGGCLPSPRGYENQPQPPQPQQQQYPQ 165


>Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 617 PXPFPRXXXXC-PRPSGWGXRXHPPQXXXXXFPQ 715
           P P+P+    C P P G+  +  PPQ     +PQ
Sbjct: 132 PQPYPQRTGGCLPSPRGYENQPQPPQPQQQQYPQ 165


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/72 (27%), Positives = 25/72 (34%)
 Frame = +3

Query: 582 PPPGEXGXAXGAXSRSXXXXXXAPXXPVGGXXXTPPKGGXPVSXKXGGXPXKKTXXXXGX 761
           PPP   G   G  + +      AP  P+GG     P GG   +   GG    +     G 
Sbjct: 32  PPPPPCGGGCGGGAPAAGGYAVAPQAPIGG-GYAQPGGGYGGAGGFGG--AYQAAPAIGG 88

Query: 762 XKPXTXKGPXGG 797
                  GP GG
Sbjct: 89  GGSYAGAGPIGG 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,452,265
Number of Sequences: 27780
Number of extensions: 222643
Number of successful extensions: 334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)