Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K10
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243...    33   0.30 
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552     32   0.53 
12_02_0526 - 20032206-20033106,20034853-20035181                       29   4.9  
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952...    29   4.9  
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    29   6.5  
06_01_1190 + 10231166-10231222,10231318-10234122                       28   8.6  
05_07_0167 + 28115290-28115349,28115952-28115996,28116087-281161...    28   8.6  

>11_06_0760 + 27017956-27018433,27018487-27019234,27023760-27024378,
            27030755-27032440
          Length = 1176

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +2

Query: 509  KAVEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKVSENVTTIAND-TKTTESST 685
            K++  N    V+   ++ S A E+NKE    A        + ENVT  AN+ T   + +T
Sbjct: 1073 KSIVQNVATQVKKEATK-SVATEANKENVASATNKEGTEFIIENVTLEANEATAAMKEAT 1131

Query: 686  KIVTSNTTTANNIQDPISSINSVHNSTEGK 775
                 N  T  N ++  +  N  + +T  K
Sbjct: 1132 TSTVENVATEGNKENVTTDTNKENVATAEK 1161


>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
          Length = 471

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 557 EHSTAIESNKELPKEAVAPSTNAKVSENVTTI-ANDTKTTESSTKIVTSNTTTANNIQDP 733
           E  T  +S      E   P  + +    V+T   ND  T   + +++TSN ++ NN    
Sbjct: 165 ESQTQHQSTTSAINEKNMPPVHEEAIAQVSTNDCNDVATASKTDELITSNVSSINNTNGS 224

Query: 734 ISSINSVHNST 766
            ++I+  H++T
Sbjct: 225 SATISDRHDAT 235


>12_02_0526 - 20032206-20033106,20034853-20035181
          Length = 409

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +2

Query: 557 EHSTAIESNKELPKEAVAPSTNAKVSENVTTIANDTKTTESSTKIVTSN 703
           +H T ++ + + P +  + +T A +S N+T  +N  K    +   ++S+
Sbjct: 297 DHQTILDDDDDHPNKTGSNTTAATLSSNITDNSNSNKNNSDNNNNISSS 345


>11_03_0065 -
           9522478-9525335,9525513-9526028,9526432-9527247,
           9527440-9527767
          Length = 1505

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/101 (17%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
 Frame = +2

Query: 539 VQSHVSEHSTAIES--NKELPKEAVAPSTNAKVSENVTTIANDTKTTESSTKIVTSNTTT 712
           ++    E S AIE+   +E+  E +      +  + +  + ++ +  E + K++  +   
Sbjct: 292 IKKQKKEKSLAIETPRTQEIKIEQIKSEEPREEIQKLDKVLSEEEQWEVNEKLLLESYEE 351

Query: 713 ANNIQDPISSINSVHNSTEGKSXLTILDIQL*EKKLIXQSW 835
            NN+ + I +I    N+ +    +  LD +    K++ + W
Sbjct: 352 ENNLIEEIENIEEEDNAEQYNDFIDSLDEEGESAKVLWEQW 392


>08_02_0749 -
           20769224-20770535,20770649-20771510,20771622-20773263,
           20773357-20773701,20773858-20773952,20774218-20774344,
           20774430-20774435
          Length = 1462

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 605 VAPSTNAKVSENVTTIANDTKTTESSTKIVTSNTTTANNIQDPISSINS 751
           V P T+  VSE  T +A  T   +SST +  SN       Q  IS + +
Sbjct: 633 VKPFTSRLVSEESTNLATVTVFNKSSTDLGWSNDKLGQTSQQSISELKN 681


>06_01_1190 + 10231166-10231222,10231318-10234122
          Length = 953

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 20/90 (22%), Positives = 34/90 (37%)
 Frame = +2

Query: 404  GVGQMEGMVGSHVLPSTLXXXXXXXXXXXXXXXNGKAVEDNSTPHVQSHVSEHSTAIESN 583
            G+GQ+EG V +H     L                G ++E  +   V       + A+E+ 
Sbjct: 863  GLGQLEGEVNTHPNRPVLLMYSDRRYHDLGAEAEGSSIEVQTADPVPDAEGSVTVAVEAT 922

Query: 584  KELPKEAVAPSTNAKVSENVTTIANDTKTT 673
              LP++       +  S+ +T   ND   T
Sbjct: 923  DPLPEQ----EGESSQSQVITLTTNDRSVT 948


>05_07_0167 +
           28115290-28115349,28115952-28115996,28116087-28116179,
           28116259-28116342,28116949-28117131,28117234-28117276,
           28117671-28117891,28118060-28118137,28118404-28118529,
           28118616-28118825
          Length = 380

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +2

Query: 584 KELPKEAVAPSTNAKVSENVTTIANDTKTTESSTKIVTSNTTTANNIQDPISS 742
           K+   E +A    +  +EN +  +  ++ +ESS K+   N+     ++DP +S
Sbjct: 268 KQAETEDLATQVESLTAENTSLRSEISRLSESSEKLRLENSALMGKLKDPAAS 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,967,714
Number of Sequences: 37544
Number of extensions: 342060
Number of successful extensions: 882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)