Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K07
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.7  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    27   4.8  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   6.3  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
 Frame = -2

Query: 552 QPRHRT*SACTEPVRPGSTSSTP---RACPWPVLAQ-----SKATCPPSESVTTSLWYSR 397
           Q  H T +  T P+ P S  STP     C  P   Q      K   PP+ S   +   S 
Sbjct: 513 QQMHATNTILTNPIDPNSNISTPVGMHLCTLPYTYQPFSSVEKIETPPNNSKNQTYRRSS 572

Query: 396 GGKNSERNT 370
            G N  R +
Sbjct: 573 RGSNKTRKS 581


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 332 WCIESRMQTVLGSVLRSLFLPPLEYQREVVTLSDGGQVALDWANTGQGQARGV-LLVLPG 508
           W   S    +LGS+ ++ F  P+  Q  V+  +  G   +  A+TG G+     + +L  
Sbjct: 124 WAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183

Query: 509 LTGSVHADYVRCL 547
              +V A YV+ L
Sbjct: 184 CLRNVDAKYVQAL 196


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 389 LPPLEYQREVVTLSDGGQVALDWAN 463
           + PLE+  EV  L+DGG+V LD  N
Sbjct: 50  MSPLEHG-EVFVLNDGGEVDLDLGN 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,125
Number of Sequences: 5004
Number of extensions: 42366
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)