Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_K07
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0413 - 21063868-21064344,21064416-21064482,21064865-210649... 44 1e-04
02_05_0135 - 26165263-26165284,26165400-26165458,26165506-261657... 42 5e-04
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 33 0.31
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 33 0.31
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 31 0.94
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 30 2.2
05_01_0514 - 4270936-4272084 29 5.0
11_02_0106 - 8358372-8360120 29 6.6
04_04_1674 - 35258000-35258779,35258960-35259097 29 6.6
>05_04_0413 -
21063868-21064344,21064416-21064482,21064865-21064948,
21065028-21065158,21065504-21065560,21065818-21065866,
21067357-21067442,21067715-21067792,21067952-21068074,
21068705-21068794,21068796-21068849,21068923-21069020,
21069093-21069160,21069688-21069777,21069870-21070117
Length = 599
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 305 LQARYWPTPWCIESRMQTVLGSVLRSLFLPPLEYQREVVTLSDGGQVALDW 457
L RY TPW +QT+ S+ S P Y+R++ T+ DGG +ALDW
Sbjct: 80 LHGRYLATPWLASPHLQTLFLSI--SGRPPSFTYRRQLYTVRDGGTIALDW 128
>02_05_0135 -
26165263-26165284,26165400-26165458,26165506-26165721,
26166309-26166362,26167029-26167123,26167220-26167317,
26167413-26167555,26167900-26168031,26168695-26168823,
26169370-26169831
Length = 469
Score = 42.3 bits (95), Expect = 5e-04
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = +2
Query: 350 MQTVLGSVLRSLFLPPLEYQREVVTLSDGGQVALDWANTGQGQA----RGVLLVLPGLTG 517
++T+ + RSL P + +RE + D G VALDW +G +A VL++LPGLTG
Sbjct: 103 VETIFAAFARSL--PAVALRRECLRTPDDGAVALDWV-SGDDRALPRDAPVLILLPGLTG 159
Query: 518 SVHADYVR 541
YVR
Sbjct: 160 GSDDTYVR 167
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 33.1 bits (72), Expect = 0.31
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = -2
Query: 522 TEPVRPGSTSSTPRACPWPVLAQSKATCPPSESVTTSLWYSRGGKNSERNTEPSTVCMRD 343
T + ++SSTP P PVLA+ C S S T+ + N + T + ++
Sbjct: 1079 TTSIFNSASSSTPPTSPTPVLAKCSWACSNSASAYTT---TSASHNIDVPTPTVAMGLQV 1135
Query: 342 SMHHGVG 322
S++HG+G
Sbjct: 1136 SLNHGIG 1142
>09_04_0308 +
16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 33.1 bits (72), Expect = 0.31
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = -2
Query: 522 TEPVRPGSTSSTPRACPWPVLAQSKATCPPSESVTTSLWYSRGGKNSERNTEPSTVCMRD 343
T + ++SSTP P PVLA+ C S S T+ + N + T + ++
Sbjct: 646 TTSIFNSASSSTPPTSPTPVLAKCSWACSNSASAYTT---TSASHNIDVPTPTVAMGLQV 702
Query: 342 SMHHGVG 322
S++HG+G
Sbjct: 703 SLNHGIG 709
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 31.5 bits (68), Expect = 0.94
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -2
Query: 513 VRPGSTSSTPRACPWPVLAQSKATCPPSES--VTTSLWYSRGGKNSERNTEPS 361
V PG+ S A P V A S+ CP S S + W RG N+ PS
Sbjct: 314 VTPGAESKDGAATPEQVAAASRRRCPASCSSPAASRRWRRRGNLNAMNQAAPS 366
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 404 YQREVVTLSDGGQVALDWA-NTGQGQARGV---LLVLPG 508
YQR + DGG +ALDW N G+ G+ + ++PG
Sbjct: 182 YQRVCIPAEDGGVIALDWPDNLDLGKEHGLDSTVFIVPG 220
>05_01_0514 - 4270936-4272084
Length = 382
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +2
Query: 317 YWPTPWCIESRMQTVLGSVLRSLFLPPLEYQREVVTLSDGGQVALDWANTGQGQARGVLL 496
Y + WC ++ + + S + L + YQR +V++ G+ W T + GV
Sbjct: 199 YRESEWCTDTGISDICRSAFCNGMLHLVSYQRSIVSVDVEGRT---WRTTKVPKMEGVEE 255
Query: 497 VLPGLTGSV 523
V L GS+
Sbjct: 256 VRDWLPGSI 264
>11_02_0106 - 8358372-8360120
Length = 582
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 184 VGFSCIAIIYNLLSCGSGQAAGVGVW 261
VGF C+ ++ L +C A G G W
Sbjct: 322 VGFDCVTLVSVLSACARSGALGTGKW 347
>04_04_1674 - 35258000-35258779,35258960-35259097
Length = 305
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 447 ATCPPSESV-TTSLWYSRGGKNSERNTEPS 361
A+CPP E++ + Y RGG NSE+ P+
Sbjct: 38 ASCPPLEAIGCDASVYLRGGSNSEQGMGPN 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,894,134
Number of Sequences: 37544
Number of extensions: 342202
Number of successful extensions: 1081
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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