Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_K07
(898 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117207-5|CAB60395.1| 375|Caenorhabditis elegans Hypothetical ... 63 2e-10
U41030-7|AAP31440.1| 250|Caenorhabditis elegans Hypothetical pr... 59 5e-09
U41030-6|AAA82365.1| 375|Caenorhabditis elegans Hypothetical pr... 59 5e-09
AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical... 30 2.0
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 6.0
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 6.0
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 29 6.0
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 6.0
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 28 7.9
>AL117207-5|CAB60395.1| 375|Caenorhabditis elegans Hypothetical
protein Y60A3A.7 protein.
Length = 375
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Frame = +2
Query: 185 LVFLVSLLYITYYLVEVVKRPELVCGAGEFRRVLEERVPVLQARYWPTPWCIESRMQTVL 364
++F + L ++Y+ ++ K + G + +V + + +L+ +Y P+ WC QT++
Sbjct: 11 IIFPILLWLYSWYITDIPK-VYVKSGTKLYEKV-KANLRILEQKYHPSWWCPFGTTQTIV 68
Query: 365 GSVLRSLFLPPLEYQREVVTLSDGGQVALDW-ANTGQGQARGVLLVLPGLTGSVH 526
V R P L ++RE+V SDGG +DW G +++ LPG+TGS H
Sbjct: 69 RQVFRDC--PTLPFKREIVEFSDGGAAGIDWLIPEGADDDAPIVVFLPGITGSTH 121
>U41030-7|AAP31440.1| 250|Caenorhabditis elegans Hypothetical
protein C44C1.5b protein.
Length = 250
Score = 58.8 bits (136), Expect = 5e-09
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Frame = +2
Query: 269 EFRRVLEERVPVLQARYWPTPWCIESRMQTVLGSVLRSLFLPPLEYQREVVTLSDGGQVA 448
+ ++ + + +L+ +Y P+ WC QTV+ + R P L + RE+V DGG
Sbjct: 37 KLQKKVHSNLRILEQKYHPSWWCPFGTTQTVVRQIFRDC--PSLPFTREIVEFDDGGAAG 94
Query: 449 LDW-ANTGQGQARGVLLVLPGLTGSVH-ADYV 538
+DW G +++ LPG+TGS H + YV
Sbjct: 95 IDWLIPEGADDTTPIVVFLPGITGSTHDSSYV 126
>U41030-6|AAA82365.1| 375|Caenorhabditis elegans Hypothetical
protein C44C1.5a protein.
Length = 375
Score = 58.8 bits (136), Expect = 5e-09
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Frame = +2
Query: 269 EFRRVLEERVPVLQARYWPTPWCIESRMQTVLGSVLRSLFLPPLEYQREVVTLSDGGQVA 448
+ ++ + + +L+ +Y P+ WC QTV+ + R P L + RE+V DGG
Sbjct: 37 KLQKKVHSNLRILEQKYHPSWWCPFGTTQTVVRQIFRDC--PSLPFTREIVEFDDGGAAG 94
Query: 449 LDW-ANTGQGQARGVLLVLPGLTGSVH-ADYV 538
+DW G +++ LPG+TGS H + YV
Sbjct: 95 IDWLIPEGADDTTPIVVFLPGITGSTHDSSYV 126
>AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical
protein Y38H6C.14 protein.
Length = 814
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 606 RVHDYCRQQYQDAGPEQLQ-PRHRT*SACTEPVRPGSTSSTPR 481
R H RQQ A LQ PRHRT SA +TS+T R
Sbjct: 216 RTHQNSRQQVPSATSSTLQNPRHRTSSASRHHSTRNATSATVR 258
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = -2
Query: 510 RPGSTSSTPRACPWPVLAQSKATCPPSESVTTSLWYSRGGKNSERNTEPSTVCMRDSMHH 331
+PG S P CP S A C P + +G + ++ VC+R++ H
Sbjct: 1818 QPGRVCSAPEVCPPNHDCSSAAVCEPLGGMKYQCVCIQGYVDQSPGSQKGRVCVRNNACH 1877
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = -2
Query: 510 RPGSTSSTPRACPWPVLAQSKATCPPSESVTTSLWYSRGGKNSERNTEPSTVCMRDSMHH 331
+PG S P CP S A C P + +G + ++ VC+R++ H
Sbjct: 2402 QPGRVCSAPEVCPPNHDCSSAAVCEPLGGMKYQCVCIQGYVDQSPGSQKGRVCVRNNACH 2461
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = -2
Query: 510 RPGSTSSTPRACPWPVLAQSKATCPPSESVTTSLWYSRGGKNSERNTEPSTVCMRDSMHH 331
+PG S P CP S A C P + +G + ++ VC+R++ H
Sbjct: 1818 QPGRVCSAPEVCPPNHDCSSAAVCEPLGGMKYQCVCIQGYVDQSPGSQKGRVCVRNNACH 1877
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = -2
Query: 510 RPGSTSSTPRACPWPVLAQSKATCPPSESVTTSLWYSRGGKNSERNTEPSTVCMRDSMHH 331
+PG S P CP S A C P + +G + ++ VC+R++ H
Sbjct: 2402 QPGRVCSAPEVCPPNHDCSSAAVCEPLGGMKYQCVCIQGYVDQSPGSQKGRVCVRNNACH 2461
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 591 CRQQYQDAGPEQLQPRHRT*SACTEPVRPGSTSSTPRACPWPVLAQSKATC 439
C+Q Q +QLQP + +ACT+ +++ P P + QS +C
Sbjct: 506 CQQSCQQQCIQQLQPIQQCATACTQSCSQSCSAAQP--AQMPCITQSANSC 554
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = -2
Query: 510 RPGSTSSTPRACPWPVLAQSKATCPPSESVTTSLWYSRGGKNSERNTEPSTVCMRDSMHH 331
+PG S P CP S A C P + +G + ++ VC+R++ H
Sbjct: 2402 QPGRVCSAPEVCPPNHDCSSAAVCEPLGGMKYQCVCIQGYVDQSPGSQKGRVCVRNNACH 2461
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -2
Query: 567 GPEQLQPRHRT*SACTEPVRPGSTSSTPRACPWPVLAQSKATCPPSE 427
GP RH A P RPG+ PR P LA S CP E
Sbjct: 109 GPSGTPGRHGRHGAPGAPGRPGNPGEPPRGPCDPTLA-SPCDCPAGE 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,882
Number of Sequences: 27780
Number of extensions: 269410
Number of successful extensions: 818
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -