Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K07
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   5.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -2

Query: 564 PEQLQPRHR----T*SACTEPVRPGSTSSTPRACPWPVLAQSKAT 442
           PEQ    H     T + C++  RP S +++ +A P  ++A S+++
Sbjct: 864 PEQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESS 908


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 196 CIAIIYNLLSCGSGQAAGVGV 258
           C   + N+++CG+G   G+G+
Sbjct: 201 CCGALKNIVACGAGFIDGLGL 221


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 585 QQYQDAGPEQLQPRHRT*SACTEPVRPGSTSSTP 484
           QQ+    P    P+H   SA T P    ++S  P
Sbjct: 57  QQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYP 90


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 390 KNSERNTEPSTVC 352
           +NS+RN+E S +C
Sbjct: 181 QNSKRNSEESAIC 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,812
Number of Sequences: 438
Number of extensions: 3502
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)