Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K05
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   127   9e-30
Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  127 bits (307), Expect = 9e-30
 Identities = 57/72 (79%), Positives = 66/72 (91%)
 Frame = +2

Query: 332 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 511
           I+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVESRIHRLARYYKTK 
Sbjct: 74  ILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYKTKR 133

Query: 512 VLPPNWKYESST 547
            LPP WKYES T
Sbjct: 134 QLPPTWKYESGT 145



 Score =  114 bits (274), Expect = 9e-26
 Identities = 50/73 (68%), Positives = 63/73 (86%)
 Frame = +1

Query: 112 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 291
           MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60

Query: 292 AQVRFVTGKKILR 330
            QVR + G KI R
Sbjct: 61  GQVRRLAGNKIFR 73


>Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical
           protein F38C2.6 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 141 YLPVGAALPPQ-CP-YLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKI 305
           YL V A LP   CP +  E D +R      QTWK G+   T  C A    +S P  I
Sbjct: 93  YLAVKADLPNNTCPAFPFETDIKR---PGNQTWKSGNGWTTRLCKAGWTLFSRPDSI 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,439,636
Number of Sequences: 27780
Number of extensions: 245573
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)