Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K03
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    49   1e-06
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    27   3.4  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   4.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.5  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
 Frame = +2

Query: 458 DMRREEERLKTFDQ--WPVTFLTPEQLARNGFYYLG--------RGDEVCCAFCKVEIMR 607
           +M    +RL TF +  WP    TPE LA  GFYY          R D V C  C      
Sbjct: 18  EMCNYSKRLDTFQKKKWPRAKPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYD 77

Query: 608 WVEGDDPAADHRRWAPQCPF 667
           W + DDP  +H   +P CP+
Sbjct: 78  WEDDDDPLKEHITHSPSCPW 97



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 521 PEQLARNGFYY---LGRGDEVCCAFCKVEIMRWVEGDDPAADHRRWAPQCPF 667
           P  +A +GF Y       D   C +C + +  W   DDP  +H+R    C F
Sbjct: 141 PSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVF 192


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -1

Query: 700 SPSVGIHLFSYKGTLGRPSPMIGSRIVAFDPPHDFYLTESTAHLVAATEVVESVAGQLF 524
           +P+V  ++++Y G+      ++ S I   +P   +Y+     H   + +   SVA Q+F
Sbjct: 104 NPTVRDNVYAYLGSQRNTKVVLTSHIDTVNPFLPYYIEGDKIHGRGSCDAKSSVAAQIF 162


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 780 ARYSTEAARLATFKDWPRCMPQK 848
           +RY+ +  + +  K W  CMPQ+
Sbjct: 456 SRYNDDTKQFSKIKSWKACMPQE 478


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 654 PSVPLYENKCMPTLGERRPLSVETNVG-PVRPRSPPRMPGPVHARYSTEAARLATFKDWP 830
           PS+P+      P L    P++     G P  P  PP  P P  A     AA +A+  + P
Sbjct: 437 PSLPMGA-PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495

Query: 831 R 833
           +
Sbjct: 496 Q 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,631
Number of Sequences: 5004
Number of extensions: 64344
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)