Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K02
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    30   0.39 
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    27   2.7  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    27   4.8  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   6.3  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.3  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   8.3  

>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 22/75 (29%), Positives = 30/75 (40%)
 Frame = +3

Query: 204 SKMDALADILQPYKEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMT 383
           SK  AL  +++ YKE+  +    +T G      F  WD   QG        PF GG+   
Sbjct: 2   SKAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDG----TPFEGGLYPA 57

Query: 384 ILNLQYGYILRDDTM 428
            L     Y L   T+
Sbjct: 58  TLKFPSDYPLGPPTL 72


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 338 SAALLVYVPAYETAGEHLPNGYEGRYRA---HYLFVRLKNIR*GVHLGGSLCFIYWCLK 171
           S+ALL    +    G  + NGY G Y+    H+L  R KN    VHL      + W ++
Sbjct: 72  SSALLYNTQSSLLTGLSM-NGYLGEYQEDIIHHLITREKNFLLNVHLSNQQPELRWSMR 129


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 247 SLYG*RISAKASILEDLYVLFIGVLNYIHYD 155
           S++G R+S   S L  +Y+  I + NY+H+D
Sbjct: 82  SIFG-RLSIFCSSLRQVYLTMILLTNYMHFD 111


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 386 DGHNNTSEERHDADPASAALLVYVPAY 306
           DG N T+   HD D  +  LLVY P Y
Sbjct: 513 DGKNTTAGN-HDVDNNTPPLLVYFPNY 538


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 386 DGHNNTSEERHDADPASAALLVYVPAY 306
           DG N T+   HD D  +  LLVY P Y
Sbjct: 513 DGKNTTAGN-HDVDNNTPPLLVYFPNY 538


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 373 TPPRNGMMPIP 341
           +PPRN MMPIP
Sbjct: 466 SPPRNAMMPIP 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,664
Number of Sequences: 5004
Number of extensions: 67633
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)