Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_K01
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.23 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.39 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.39 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.39 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 686 PXXAPPPXEXPPXXXPPXXXXXXPPPG 766
           P   PPP   PP   PP      PPPG
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
 Frame = +2

Query: 590  PQXXGIPQXKXXDPKXPPKG-PXPXXGPXWXXXPXXAPPP 706
            PQ    PQ     P  PP   P P   P     P  APPP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
 Frame = +2

Query: 638  PPK--GPXPXXGPXWXXXPXXAPPPXEXPPXXXPP 736
            PP+   P P   P     P  APP    PP   PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 21/72 (29%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
 Frame = +2

Query: 560  PPPQGGXXXXPQXXGIPQXKXXDPKXPPKGPXPXXG----PXWXXXPXXAPPPXEXPPXX 727
            P P       P   G P         PP  P P  G    P         PPP E PP  
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPV-PAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201

Query: 728  XPPXXXXXXPPP 763
             P       PPP
Sbjct: 1202 KPSVGVPPVPPP 1213



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
 Frame = +2

Query: 605  IPQXKXXDPKXPPKGPXPXXGPXWXXXPXXAPP---PXEXPPXXXPPXXXXXXPPPGXXX 775
            +P+     P  PP  P P         P  APP   P   PP   P       P P    
Sbjct: 1052 VPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAV 1111

Query: 776  XP 781
             P
Sbjct: 1112 PP 1113



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 21/75 (28%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
 Frame = +2

Query: 560  PPPQGGXXXXPQXX-GIPQXKXXDPKXPPKGPXPXXGPXWXXXPXXAPPPXEXPPXXXPP 736
            P P  G    P+   G+P      P  PP    P   P     P   PPP   PP   P 
Sbjct: 1172 PAPSSGIPPVPKPAAGVP------PVPPPSEAPPVPKPSVGVPP--VPPPSTAPPVPTPS 1223

Query: 737  XXXXXXPPPGXXXXP 781
                  P P     P
Sbjct: 1224 AGLPPVPVPTAKAPP 1238



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
 Frame = +2

Query: 605  IPQXKXXDPKXP-PKGPXPXXGPXWXXXPXXAPPPXEXPPXXXPPXXXXXXPPP 763
            +P+     P  P P G  P   P     P  AP     PP   P       PPP
Sbjct: 1142 VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG-IPPVPKPAAGVPPVPPP 1194


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = +2

Query: 629 PKXPPKGPXPXXGPXWXXXPXXAPPPXEXPPXXXPPXXXXXXPPPGXXXXPXXS 790
           P  PP    P   P     P  AP     PP   PP      PPP     P  S
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
 Frame = +1

Query: 637 PPXGPXTXXRXXXXXXXPXGPPPP--GGPXXX-XPPXXXGXXPPP 762
           PP  P            P  PP P  GGP     PP   G  PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/45 (28%), Positives = 14/45 (31%)
 Frame = +2

Query: 629 PKXPPKGPXPXXGPXWXXXPXXAPPPXEXPPXXXPPXXXXXXPPP 763
           P   P  P     P     P  +PP     P   PP      PPP
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,990
Number of Sequences: 5004
Number of extensions: 16549
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)