Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_J24
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 33 0.072
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 31 0.22
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 29 0.67
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 29 1.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 1.2
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 29 1.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 28 2.0
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 2.0
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 2.7
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 2.7
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 27 3.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 3.6
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 27 4.7
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 4.7
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 6.2
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 6.2
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 6.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 6.2
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 26 8.2
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 8.2
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 32.7 bits (71), Expect = 0.072
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 304 IDFSPDQLKQLNESQRMTQITQTFED-TQSIEERSENSTTSNVENDNTEEMERSQN 468
I+FS D LK +NE + M QI +TF+ + +E+S + + ++TEE E N
Sbjct: 838 INFSDDDLKLMNEEEIMEQI-ETFKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNN 892
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 31.1 bits (67), Expect = 0.22
Identities = 15/58 (25%), Positives = 34/58 (58%)
Frame = +1
Query: 319 DQLKQLNESQRMTQITQTFEDTQSIEERSENSTTSNVENDNTEEMERSQNTDNIRRLS 492
D+L+Q N+ Q + I ++++ +EE++E+ + NV + E ++NT ++ L+
Sbjct: 76 DKLQQENKDQELKNIEESYK---KLEEKTEHLSDDNVSLEKRVEYLETENTKLVKTLN 130
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 367 QTFEDTQSIEERSENSTTSNVENDNTEEMERSQNTDNIRRLSRKR 501
Q+ E ++S EE S S + E+++ + R + TD+ ++ +KR
Sbjct: 234 QSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKKR 278
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 381 VFKGLSYLSHSLAFVKLFQLIWTEVDFTNKAIFL 280
VF+ L+ LS + F+ L ++T+VD K IF+
Sbjct: 319 VFRVLAQLSENFIFIYLGMSLFTQVDLVYKPIFI 352
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 328 KQLNESQRMTQITQTFEDTQSIEERSENSTTSNVENDNTEEMERSQNTDNIR 483
KQL + Q ++ I QT EDT E S N + E E++E N++
Sbjct: 4366 KQLQDGQDISDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDELPDYNVK 4417
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 301 KIDFSPDQLKQLNESQRMTQITQTFEDTQ-SIEERSENSTTSNVENDNTEEMERSQNTDN 477
K+D ++ + + + + Q EDT+ + E+S ++ N + + ++ ++S+N
Sbjct: 82 KLDKGDEETNETQQEDLLNTLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPKKSRNRQK 141
Query: 478 IRRLSRKR 501
RL R++
Sbjct: 142 -ERLERRK 148
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/52 (25%), Positives = 31/52 (59%)
Frame = +1
Query: 340 ESQRMTQITQTFEDTQSIEERSENSTTSNVENDNTEEMERSQNTDNIRRLSR 495
+S ++T ++ +S EE+S++ T+++V +NT ++ N DN+ + +
Sbjct: 976 DSAQLTSEPKSESLPKSPEEKSDD-TSNDVTTENTNDINGDSNMDNVATVDK 1026
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +3
Query: 222 CIACEKAIHTRCLNQYLEKIKK--WPC 296
C CE A HT CL+ L I K W C
Sbjct: 286 CDGCEAAYHTSCLDPPLTSIPKEDWYC 312
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +1
Query: 283 KNGLVCKIDFSPDQLKQLNESQRMTQITQTFEDTQSIEERSENSTTSNVENDNTEEMERS 462
K V +F P +L +LNE++ + + +E+ + N+ T E D +E E
Sbjct: 383 KRAPVAVTEFRPSELFELNENKSQRSLAEEYEEEFL---KKSNADTYKSEADKKKEKEHE 439
Query: 463 Q 465
+
Sbjct: 440 E 440
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = +1
Query: 310 FSPDQLKQLNESQRMTQITQTFEDTQSIEE-RSENSTTSNVENDNTEEMERSQNTDNIRR 486
FSP+ + + + ++ E+ +S E SE S +S+ E+DN+E+ +RS +R
Sbjct: 514 FSPEIREPSLTKKTAVSMQESKEEGRSDESSESEESGSSSDESDNSEKEDRSNPIPVEKR 573
Query: 487 ----LSRKRKRE 510
L+ K+KR+
Sbjct: 574 ASTVLNTKKKRK 585
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 379 DTQSIEERSENSTTSNVENDNTEEMER 459
DT IEE+S+ SN + + EE+ER
Sbjct: 698 DTDEIEEQSDWEMISNQDASDNEELER 724
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 364 TQTFEDTQSIEERSENSTTSNVENDNTEEMER--SQNTDNIRRLSRKRKRE 510
T T ED Q RS++ + D T + ++N DN+R +SR +RE
Sbjct: 1406 TPTNEDIQ----RSDSKLREDQSRDRTPQSRSFTNENNDNLRSVSRHTRRE 1452
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -2
Query: 260 KAPSVNSFFTCYAISNPVNLIRTR*ASSTLITPLLAIVLKKYL*TLL 120
K+ +NSF +SN VNL R + S I L+++ ++ YL LL
Sbjct: 122 KSDFLNSFVLMQTVSNIVNLHRLKSMDSD-IHALISMAVRDYLANLL 167
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 313 SPDQLKQLNESQRMTQITQTFEDTQSIEERSE--NSTTSNV-ENDNTEEMERSQNTD 474
SP+ LN+ +IT + + ++ +E N TT N E+ N E++ N D
Sbjct: 36 SPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNND 92
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +1
Query: 313 SPDQLKQLNESQRMTQITQTFEDTQSIEERSENSTTSNVENDNTEEMERSQNTDNIRRLS 492
S D + N++ ++ + E S NS +S+ E+D+ +E + Q + +
Sbjct: 121 SDDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDETQ--QLLRELENIK 178
Query: 493 RKRKRE 510
++RKRE
Sbjct: 179 QERKRE 184
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 222 CIACEKAIHTRCLNQYLEKIKKWPC 296
C C+ A HT CLN I+++ C
Sbjct: 140 CDGCDDAYHTYCLNMDAVPIEEFYC 164
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 325 LKQLNESQRMTQITQTFEDTQSIEERSENSTTSNVENDNTEEMERSQNTDNIRRLSRKRK 504
LKQ E + + + E EE E STT+ E D EE + D + ++ + K
Sbjct: 204 LKQKIEEENDEILEDSKESKDENEENKETSTTNVAETDAPEE----ETVDTVEEIADEEK 259
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +1
Query: 319 DQLKQLNESQRMTQITQTFEDTQSIEERSENSTTSNVENDNTEEMERSQNTDN 477
+ + + E + ++ E SI +N END+ EE+ER +N
Sbjct: 562 ESITERKEEAPVISSSEKIESGTSISTSDTKGGLANFENDSLEELERLIQQNN 614
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 44 FLKKFKPLRNFINKHKLKIFNQPCLTVKFTDIF 142
F ++P NF+ + KL N CL +K +F
Sbjct: 324 FANLYRPYFNFLRQKKLIPINCECLNIKAYTLF 356
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 391 IEERSENSTTSNVENDNTEEMERSQNTDNIRRLSRKRKRE 510
+ E S + S TE SQN D+ +R RK++R+
Sbjct: 22 VSEISVSDEESAQPTTITENFTASQNNDSAKREKRKKQRQ 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,546
Number of Sequences: 5004
Number of extensions: 47816
Number of successful extensions: 215
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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