Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_J24
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81536-4|CAB04364.1| 310|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF068713-1|AAC17794.1| 206|Caenorhabditis elegans Hypothetical ... 29 4.4
AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical ... 29 4.4
Z81037-6|CAB02748.2| 414|Caenorhabditis elegans Hypothetical pr... 29 5.9
U41013-2|AAA82300.1| 557|Caenorhabditis elegans Hypothetical pr... 29 5.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 5.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 5.9
AC017117-6|AAF16615.1| 201|Caenorhabditis elegans Hypothetical ... 28 7.8
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 334 LNESQRMTQITQTFEDTQSIEERSENSTTSNVENDNTEEMERSQNTDNIRRLSRKRK 504
+ E Q + + E+ +S E E +TTS+ ++ TEE E + T + + K
Sbjct: 176 VEEEQTVKSTEASTEEEKSTEASEEATTTSSETSETTEESEEEETTTKPAKTHKSSK 232
>Z81536-4|CAB04364.1| 310|Caenorhabditis elegans Hypothetical
protein F40D4.5 protein.
Length = 310
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = -1
Query: 540 HKNTFCTINSFSLPFSR-ETSYVICILTSFHFFCIIIFYIRSC*ILRPFFNGLRVFKGLS 364
H N C ++ P R ++SY+ C+L+ H C ++F I + +L F G+R+ + +
Sbjct: 27 HFNFLCL--TYKKPALRSKSSYLQCVLSVSHIIC-LLFEIPNAALL---FTGIRLKRNVC 80
Query: 363 YLSHSL-AFVKLFQLIWTEVDFTNKAIFLFF 274
+ + S+ F FQ + + + I +FF
Sbjct: 81 FPAISIYVFFICFQAVMILMLVIDLLIIVFF 111
>AF068713-1|AAC17794.1| 206|Caenorhabditis elegans Hypothetical
protein T24A6.7 protein.
Length = 206
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 368 KPLKTRSPLKKGRRIQQLLM*KMIIQKKWKEVKIQITYDVSLEKGRENEFMVQNVF 535
K LK P K R +QL M K +++ W + ++ Y+ LEK +N +N+F
Sbjct: 71 KILKETDPRKMKRLGRQLSMSKKQLEE-WSQNSKEVMYNGCLEKFSQNNVCRENLF 125
>AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical
protein Y39G10AR.11 protein.
Length = 788
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +1
Query: 319 DQLKQLNESQRMTQITQTFEDTQSIEERSENSTTSNVENDNTEEMERSQNTD 474
DQLK++NE + + E + + S++S+ S+ +D+++ E + D
Sbjct: 707 DQLKEVNEELKKNLGVEVLESSDDSDCSSDSSSDSDCSSDSSDSEEDEEYRD 758
>Z81037-6|CAB02748.2| 414|Caenorhabditis elegans Hypothetical
protein C17E4.10 protein.
Length = 414
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +1
Query: 313 SPDQLKQLNESQRMTQI----TQTFEDTQSIEERSENSTTSNVENDNTEEMERSQNTDNI 480
SP+Q + E ++MT+ + + ++EE + T + E +N EEM+ D++
Sbjct: 203 SPEQEIEAEEIRKMTESFGEPRKAVLERVTVEETDDEETETETETEN-EEMDEKDVYDDV 261
Query: 481 RR 486
RR
Sbjct: 262 RR 263
>U41013-2|AAA82300.1| 557|Caenorhabditis elegans Hypothetical
protein T06C10.3 protein.
Length = 557
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 376 EDTQSIEERSE--NSTTSNVENDNTEEMERSQNTDNIRRLSRKRKR 507
+D + +EE+ E S + VE ++E +QNTDN + L ++
Sbjct: 59 DDKKEVEEKKEIEKSVEAKVEGKVKAKVESTQNTDNSQELKAPEEK 104
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +1
Query: 376 EDTQSIEERSENSTTSNVENDNTEEMERSQNTDNIRRLSRKRKRE 510
+ QS++++SEN + + + D ++E+E + T + S K+K E
Sbjct: 10822 DSQQSLKKKSENESVTGEQLDKSQEVEDDKMTIQSLKKSIKKKPE 10866
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +1
Query: 376 EDTQSIEERSENSTTSNVENDNTEEMERSQNTDNIRRLSRKRKRE 510
+ QS++++SEN + + + D ++E+E + T + S K+K E
Sbjct: 10822 DSQQSLKKKSENESVTGEQLDKSQEVEDDKMTIQSLKKSIKKKPE 10866
>AC017117-6|AAF16615.1| 201|Caenorhabditis elegans Hypothetical
protein F43C11.4 protein.
Length = 201
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 376 EDTQSIEERSENSTTSNVENDNTE 447
EDT I +STTSN+E D TE
Sbjct: 59 EDTTLIASEEISSTTSNMETDTTE 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,239,232
Number of Sequences: 27780
Number of extensions: 281396
Number of successful extensions: 1037
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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