Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J23
         (921 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    34   0.16 
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   0.88 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   0.88 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   0.88 
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   6.2  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 586 PPXGGXPXXXXFXXXAPXGXPPPKGXXFWGFXPRXPPP 699
           PP  G P           G PPP+G    GF P  PPP
Sbjct: 707 PPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPP 744


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -2

Query: 422 PPPXXGKKKXXPGGGXXXXXXXRGGPKPXXDTRAAQXXXXSPPXRXGGGP 273
           PPP  G     P GG        G P P    R +      PP + GG P
Sbjct: 273 PPPPTGSPPPPPAGG-SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 321


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -2

Query: 422 PPPXXGKKKXXPGGGXXXXXXXRGGPKPXXDTRAAQXXXXSPPXRXGGGP 273
           PPP  G     P GG        G P P    R +      PP + GG P
Sbjct: 294 PPPPTGSPPPPPAGG-SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 342


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -2

Query: 422 PPPXXGKKKXXPGGGXXXXXXXRGGPKPXXDTRAAQXXXXSPPXRXGGGP 273
           PPP  G     P GG        G P P    R +      PP + GG P
Sbjct: 279 PPPPTGSPPPPPAGG-SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 327


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/64 (25%), Positives = 19/64 (29%)
 Frame = +1

Query: 631 APXGXPPPKGXXFWGFXPRXPPPXGXXXKXXXXXXXXXXXXXXXXXXRGXPPETPXXXPP 810
           +P   PPP+     G  P  PPP                        +  PP TP    P
Sbjct: 121 SPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEP 180

Query: 811 XXPP 822
             PP
Sbjct: 181 RNPP 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,764,917
Number of Sequences: 27780
Number of extensions: 181581
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)