Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J21
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.9  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   8.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 429 ELVCSPAPFFCSIVQVTTYLYGFCNLVNCPRHDSTTAEVHWL 304
           +L  + +P+F +  ++ T   G    ++C  H  T   V WL
Sbjct: 801 QLKVNSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWL 842


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 429 ELVCSPAPFFCSIVQVTTYLYGFCNLVNCPRHDSTTAEVHWL 304
           +L  + +P+F +  ++ T   G    ++C  H  T   V WL
Sbjct: 797 QLKVNSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWL 838


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 23  LYSGLPXXTFAYSXCRWPNCFVC 91
           LY   P     YS   +P CFVC
Sbjct: 396 LYGMTPSDIDKYSRIVFPVCFVC 418


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 23  LYSGLPXXTFAYSXCRWPNCFVC 91
           LY   P     YS   +P CFVC
Sbjct: 396 LYGMTPSDIDKYSRIVFPVCFVC 418


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 23  LYSGLPXXTFAYSXCRWPNCFVC 91
           LY   P     YS   +P CFVC
Sbjct: 334 LYGMTPSDIDKYSRIVFPVCFVC 356


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +2

Query: 185 QRXATNLDAENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKL 358
           +R A +  A    + DD+  + K        G+   HN + +   A + +CL +L  L
Sbjct: 17  EREAEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKVL 74


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 490 YVLHCLSLWAWHITWIYYIHLLA*NLFY 573
           Y    LS W    T IYYI +LA  LFY
Sbjct: 102 YATCVLSCW----TNIYYIIILAWALFY 125


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 490 YVLHCLSLWAWHITWIYYIHLLA*NLFY 573
           Y    LS W    T IYYI +LA  LFY
Sbjct: 155 YATCVLSCW----TNIYYIIILAWALFY 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,857
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)