Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J19
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 734  PPRXKKKKXXPPFGGXPPPPXXKKXXXSPXKTPP 835
            PP+       PP    PPPP        P   PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/61 (29%), Positives = 18/61 (29%)
 Frame = -2

Query: 906 PXPPXXKXXXFXXFXXXGKKXGXXGGVXWGEXXXFXIXGGGGXPPXGGXXXXXXXRGGPX 727
           P P       F  F   G   G  GG   G        GG G  P G         GGP 
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259

Query: 726 G 724
           G
Sbjct: 260 G 260


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 20/82 (24%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
 Frame = +2

Query: 605 PPXGGXXXXPQKGGXXXKXSFXPXPXKXXKXXXGXXGFFXPXG--PPRXKKKKXXPPFGG 778
           PP       P  G      S  P P        G      P G   P     +  P  G 
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL-PPQGRSAPPPPPPRSAPSTGR 374

Query: 779 XPPPPXXKKXXXSPXKTPPXXP 844
            PPP    +   +P   PP  P
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIP 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,828
Number of Sequences: 5004
Number of extensions: 23955
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)