Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_J19
(922 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.56
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 32 0.74
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 31 1.3
08_01_0059 - 394001-394708 30 2.3
03_01_0515 - 3864796-3865425 30 2.3
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 30 3.0
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 30 3.0
09_02_0603 - 11150739-11150746,11150791-11151340 29 3.9
05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048 29 3.9
12_01_0252 + 1868670-1869200,1870167-1871120 29 5.2
11_01_0252 + 1934505-1935032,1936001-1936957 29 5.2
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 29 5.2
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.1
03_06_0173 - 32140932-32141147 28 9.1
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.3 bits (70), Expect = 0.56
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +2
Query: 725 PXGPPRXKKKKXXPPFGGXPPPPXXKKXXXSPXKTPPXXPXFXPXXXK 868
P PP K PP G PPPP K P P P P K
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +2
Query: 725 PXGPPRXKKKKXXPPFGGXPPPPXXKKXXXSPXKTPPXXPXFXPXXXK 868
P PP PP G PPPP P K P P P K
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKK 374
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 292 GXPXPPPXGGXPPPXP 245
G P PPP G PPP P
Sbjct: 343 GPPPPPPAKGPPPPPP 358
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.9 bits (69), Expect = 0.74
Identities = 23/102 (22%), Positives = 29/102 (28%)
Frame = +2
Query: 539 PPPXXPPKKXXXXXXGGGXXFFPPXGGXXXXPQKGGXXXKXSFXPXPXKXXKXXXGXXGF 718
PPP P G F P P + +F P P + + +
Sbjct: 31 PPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPP-HQPQFNFGPGPPQQQQPPPPPQMY 89
Query: 719 FXPXGPPRXKKKKXXPPFGGXPPPPXXKKXXXSPXKTPPXXP 844
+ P PP P PPPP P PP P
Sbjct: 90 YQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQP 131
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 731 GPPRXKKKKXXPPFGGXPPPPXXKKXXXSPXKTPP 835
GPPR + PP PPPP P + PP
Sbjct: 263 GPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPP 297
>08_01_0059 - 394001-394708
Length = 235
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +2
Query: 734 PPRXKKKKXXPPFGGXPPPPXXKKXXXSPXKTPPXXPXFXP 856
PP ++ PP PPPP SP PP P P
Sbjct: 2 PPPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRP 42
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 734 PPRXKKKKXXPPFGGXPPPPXXKKXXXSPXK-TPPXXPXFXP 856
PP PP PPPP SP K +PP P + P
Sbjct: 83 PPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPPPAWSP 124
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 725 PXGPPRXKKKKXXPPFGGXPPPPXXKKXXXSPXKTPP 835
P PP PP PPPP P PP
Sbjct: 73 PPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPP 109
>08_02_0864 +
21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 538 PPPPXPPXKXXXXXXGGGGXXFSP 609
PPPP PP GGGG SP
Sbjct: 28 PPPPLPPPPASQVGAGGGGGAASP 51
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 538 PPPPXPPXKXXXXXXGGGGXXFSPXGGG 621
PPPP PP G G P GGG
Sbjct: 62 PPPPPPPQPTTTTAAGAAGEEARPVGGG 89
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = +2
Query: 734 PPRXKKKKXX--PPFGGXPPPPXXKKXXXSPXKTPPXXP 844
PPR +K PPFG PPPP P P P
Sbjct: 27 PPRLEKGNFALPPPFGFPPPPPPGSTFVPLPQSGVPPPP 65
>05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048
Length = 378
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 539 PPPXXPPKKXXXXXXGGGXXFFP 607
PPP PP K GGG F+P
Sbjct: 230 PPPEQPPAKPDGGKDGGGGAFYP 252
>12_01_0252 + 1868670-1869200,1870167-1871120
Length = 494
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 538 PPPPXPPXKXXXXXXGGGGXXFSPXGG 618
PPPP PP GGGG GG
Sbjct: 64 PPPPPPPLNWPTAGGGGGGSGGGGRGG 90
>11_01_0252 + 1934505-1935032,1936001-1936957
Length = 494
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 538 PPPPXPPXKXXXXXXGGGGXXFSPXGG 618
PPPP PP GGGG GG
Sbjct: 63 PPPPPPPLNWPMAGGGGGGSGGGGRGG 89
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 725 PXGPPRXKKKKXXPPFGGXPPPPXXKK 805
P PP + K PP PPPP KK
Sbjct: 1934 PPPPPPVEGKPKPPPHAPPPPPPEAKK 1960
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 764 PPFGGXPPPPXXKKXXXSPXKTPPXXP 844
PP PPPP K SP PP P
Sbjct: 545 PPPPPPPPPPSGNKPAFSPPPPPPPPP 571
>03_06_0173 - 32140932-32141147
Length = 71
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 292 GXPXPPPXGGXPPPXP 245
G P PPP G PPP P
Sbjct: 44 GTPLPPPGVGAPPPEP 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,608,474
Number of Sequences: 37544
Number of extensions: 507895
Number of successful extensions: 4855
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4230
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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