Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J18
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   202   3e-52
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    36   0.039
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    36   0.039
Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging ...    28   7.8  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  202 bits (493), Expect = 3e-52
 Identities = 93/109 (85%), Positives = 101/109 (92%)
 Frame = +1

Query: 142 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 321
           GAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVI
Sbjct: 23  GAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVI 82

Query: 322 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 468
           RQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 83  RQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +3

Query: 75  MSKRGRGGSAGAKFRISLGLPXGS 146
           MSKRGRGG++GAKFRISLGLP G+
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGA 24


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 494 LEYTFKISNCVSLSFPSTSKSNPKNYNLRNRHL-QCKCAKLEYTFM 628
           LE  F ++N  +   PSTS S+P N N R R L +C     +YT M
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 490


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 494 LEYTFKISNCVSLSFPSTSKSNPKNYNLRNRHL-QCKCAKLEYTFM 628
           LE  F ++N  +   PSTS S+P N N R R L +C     +YT M
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 490


>Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical
           protein F52B5.5b protein.
          Length = 197

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 506 FKISNCVSLSFPSTSKSNPKNYNLRNRHL-QCKCAKLEYTFM 628
           F ++N  +   PSTS S+P N N R R L +C     +YT M
Sbjct: 2   FNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 43


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 203 WTAITYRFFAPVLSAQLITAPXWETQGDTEFRSRGTTTSSLRHF 72
           ++  T  FF PVL+ + +T   W T       ++ TTT++LR++
Sbjct: 353 YSTSTTPFFRPVLTTRPVTTTTWRTTRRITTTTKPTTTTTLRNY 396


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 525 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 394
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 3 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
 Frame = +1

Query: 73  KCLREDVVVP---RERNSVSPWVSQXGAVINCADNTG----AKNLY----VIAVQGIKGR 219
           KCLR D+++    R+    + W+     VI+C  N G    ++ +Y      A + + G 
Sbjct: 207 KCLRADILIVAIGRKHFVKADWIKPGAFVIDCGINVGDDPNSRKIYGDVDTEAAKEVAGF 266

Query: 220 LNRLPAAGSGDMIVATVKKGKPELRKK 300
           L  +P  G G M VA + +   E  K+
Sbjct: 267 LTPVP-GGVGPMTVAMLIRNTFEQAKR 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,026,534
Number of Sequences: 27780
Number of extensions: 320815
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)