Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J15
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...   120   2e-28
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   2.7  

>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score =  120 bits (290), Expect = 2e-28
 Identities = 62/154 (40%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
 Frame = +1

Query: 169 FTNLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRILA 348
           F +L  K+  G        KG V ++VN AS+CG T   YK L  LY++Y + +G  IL 
Sbjct: 4   FYDLAPKDKDGNPFPFSNLKGKVVLVVNTASKCGFTPQ-YKGLEALYQKY-KDRGFIILG 61

Query: 349 FPCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLGSF 525
           FPCNQF  QEPG+ EEI  F  +   V F +  K++VNGDN  P++++LK ++       
Sbjct: 62  FPCNQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLER 121

Query: 526 IKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLE 627
           IKWNF KF++N+ G  +ER+   + P  L   +E
Sbjct: 122 IKWNFEKFLVNRQGQVIERYSSISKPEHLENDIE 155


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 202 EDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGE 324
           EDV+   YKG + +++NV   C      Y  LNEL+E   E
Sbjct: 493 EDVR-PPYKG-IILMLNVLDSCTNYVGRYTFLNELFEYLQE 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,914
Number of Sequences: 5004
Number of extensions: 65388
Number of successful extensions: 159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)