Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_J15
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0111 - 10129531-10129563,10129645-10129812,10130366-101304... 190 1e-48
04_04_0755 + 27812097-27812144,27812377-27812462,27812976-278130... 189 2e-48
02_05_0224 + 26948263-26948520,26948831-26948907,26949597-269496... 185 5e-47
06_01_0600 + 4332886-4332896,4332968-4333067,4333588-4333664,433... 164 7e-41
03_03_0010 + 13712339-13712392,13712506-13712582,13712715-137127... 158 5e-39
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 58 1e-08
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 30 2.1
>11_03_0111 -
10129531-10129563,10129645-10129812,10130366-10130484,
10130589-10130650,10131043-10131119,10131659-10131838
Length = 212
Score = 190 bits (464), Expect = 1e-48
Identities = 90/153 (58%), Positives = 115/153 (75%), Gaps = 1/153 (0%)
Frame = +1
Query: 175 NLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRILAFP 354
++ K+IKG DVKL Y+G V +IVNVAS+CGLT +NYK+LN LYE+Y E KGL ILAFP
Sbjct: 56 DISVKDIKGNDVKLSEYEGKVLLIVNVASKCGLTNSNYKELNVLYEKYKE-KGLEILAFP 114
Query: 355 CNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLGSFIK 531
CNQFAGQEPG+ EEI R K +F +F+K+DVNG A+PL+K+LK ++GG LG IK
Sbjct: 115 CNQFAGQEPGSNEEIEQTVCTRFKAEFPIFDKIDVNGKEAAPLYKFLKSQKGGFLGDGIK 174
Query: 532 WNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 630
WNFTKF++ KDG VER+ P T PL + ++K
Sbjct: 175 WNFTKFLVGKDGKVVERYAPTTSPLKIENDIQK 207
>04_04_0755 +
27812097-27812144,27812377-27812462,27812976-27813037,
27813256-27813374,27813511-27813678,27813766-27813798
Length = 171
Score = 189 bits (461), Expect = 2e-48
Identities = 87/157 (55%), Positives = 117/157 (74%), Gaps = 1/157 (0%)
Frame = +1
Query: 163 HPFTNLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRI 342
H FT ++ G+DV L YKG V +IVNVASQCGLT +NY +L++LYE+Y + +G I
Sbjct: 11 HDFTVKGVQDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKY-KVQGFEI 69
Query: 343 LAFPCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLG 519
LAFPCNQF GQEPG+ EEIV FA R K ++ +F+KVDVNG+NA+PL+KYLK +GG G
Sbjct: 70 LAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNKGGLFG 129
Query: 520 SFIKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 630
IKWNF+KF+++K+G V+R+ P T PL + K ++K
Sbjct: 130 DSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKK 166
>02_05_0224 +
26948263-26948520,26948831-26948907,26949597-26949658,
26949797-26949915,26950326-26950493,26950587-26950619
Length = 238
Score = 185 bits (450), Expect = 5e-47
Identities = 86/157 (54%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Frame = +1
Query: 163 HPFTNLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRI 342
H FT K+ G+DV L +KG V +IVNVASQCGLT +NY +L++LYE+Y + +G I
Sbjct: 81 HDFT---VKDASGKDVDLSTFKGKVLLIVNVASQCGLTNSNYTELSQLYEKY-KDQGFEI 136
Query: 343 LAFPCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLG 519
LAFPCNQF GQEPG EEIV FA R K ++ +F+KVDVNGDN +P++K+LK +GG G
Sbjct: 137 LAFPCNQFGGQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDNTAPIYKFLKSSKGGLFG 196
Query: 520 SFIKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 630
IKWNF+KF+++K+G VER+ P T PL + K ++K
Sbjct: 197 DNIKWNFSKFLVDKEGRVVERYAPTTSPLSMEKDIKK 233
>06_01_0600 +
4332886-4332896,4332968-4333067,4333588-4333664,
4333774-4333835,4334016-4334134,4334237-4334404,
4335004-4335123
Length = 218
Score = 164 bits (399), Expect = 7e-41
Identities = 75/143 (52%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Frame = +1
Query: 187 KNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRILAFPCNQF 366
++I G+DV L +KG +IVNVASQCGLT NY +L+ LYE+Y +++G ILAFPCNQF
Sbjct: 37 QDIDGKDVALSKFKGRALLIVNVASQCGLTTANYTELSHLYEKY-KTQGFEILAFPCNQF 95
Query: 367 AGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLGSFIKWNFT 543
QEPG+ +I FA R K +F +F+KVDVNG N +P++K+LK GG LG +KWNF
Sbjct: 96 GAQEPGSNPQIKQFACTRFKAEFPIFDKVDVNGPNTAPIYKFLKSSAGGFLGDLVKWNFE 155
Query: 544 KFIINKDGVPVERHGPNTDPLDL 612
KF+++K G VER+ P T P +
Sbjct: 156 KFLVDKTGKVVERYPPTTSPFQI 178
>03_03_0010 +
13712339-13712392,13712506-13712582,13712715-13712776,
13713231-13713349,13714928-13715095,13715183-13715212
Length = 169
Score = 158 bits (384), Expect = 5e-39
Identities = 80/160 (50%), Positives = 111/160 (69%), Gaps = 5/160 (3%)
Frame = +1
Query: 163 HPFTNLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGESKGLRI 342
H FT K+ G++V L++YKG V I+VNVAS+CG T NY QL ELY+++ + K I
Sbjct: 13 HEFT---VKDCNGKEVSLEMYKGKVLIVVNVASKCGFTETNYTQLTELYQKHRD-KDFEI 68
Query: 343 LAFPCNQFAGQEPGNPEEIVCFASER-KVKFDLFEKVDVNGDNASPLWKYLKHKQGGTLG 519
LAFPCNQF QEPG+ ++I FA R K ++ +F+KV VNG +A+PL+K+LK + G G
Sbjct: 69 LAFPCNQFLRQEPGSDQQIKDFACTRFKAEYPVFQKVRVNGPDAAPLYKFLKASKPGLFG 128
Query: 520 SFIKWNFTKFIINKDGVPVERHGPNTDPL----DLVKSLE 627
S IKWNFTKF+I+K+G + R+ T PL D++K+LE
Sbjct: 129 SRIKWNFTKFLIDKNGKVINRYSTATSPLSFEKDILKALE 168
>04_04_1636 + 34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/55 (50%), Positives = 37/55 (67%)
Frame = +1
Query: 163 HPFTNLPXKNIKGEDVKLDVYKGHVCIIVNVASQCGLTANNYKQLNELYEQYGES 327
H FT K+ +G DV+L YKG V +IVN AS+CGLT NY +L +LY +Y E+
Sbjct: 919 HEFT---VKDARGSDVELSRYKGKVVLIVNAASRCGLTNYNYTELGQLYGKYKET 970
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -1
Query: 579 FNRNSILVYDELGKVPLDEATKGASLLMLQILPQWTGIVSIDINFLKQIK 430
F +++ + + LG+ PL G++L + + W G ++I I+ L + K
Sbjct: 383 FEEHAVKITERLGRSPLAAKVVGSNLKRVMNIDDWKGALTIKIDNLSEPK 432
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,649,542
Number of Sequences: 37544
Number of extensions: 380509
Number of successful extensions: 972
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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