Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_J14
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 279 5e-76
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 98 2e-21
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 67 4e-12
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 66 6e-12
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 64 3e-11
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 47 3e-06
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.29
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.67
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 1.2
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 27 2.7
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 3.6
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.2
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 6.2
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 8.2
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 8.2
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 8.2
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 279 bits (683), Expect = 5e-76
Identities = 128/180 (71%), Positives = 163/180 (90%), Gaps = 1/180 (0%)
Frame = +1
Query: 229 YEPPIPTRVGKKKRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE 405
YEPP+PTR G++K+KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LLMEEE+++NQE
Sbjct: 31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQE 90
Query: 406 RLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 585
RLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YVSI+SFVDKD
Sbjct: 91 RLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDM 149
Query: 586 LEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAXXETYADIGGLDTQIQEIKESVEL 765
LEPGCSVLL+HK ++VG+L DDTDPM++VMKL+KA E+YADIGGL++QIQEIKE+VEL
Sbjct: 150 LEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVEL 209
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 97.9 bits (233), Expect = 2e-21
Identities = 52/146 (35%), Positives = 87/146 (59%)
Frame = +1
Query: 349 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 528
LER + L ++E FI+ E K + ++ + +V ++ P+ +G E ID N AIV
Sbjct: 16 LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73
Query: 529 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAXXETY 708
++ GS + V ILS +D++ L+P SV L +A+V +L + D +S+++ ++ +Y
Sbjct: 74 STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSY 133
Query: 709 ADIGGLDTQIQEIKESVELLXPSGXL 786
AD+GGLD Q QE++E+VEL G L
Sbjct: 134 ADVGGLDVQKQEVREAVELPLTQGDL 159
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 66.9 bits (156), Expect = 4e-12
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Frame = +1
Query: 352 ERIKDYLLMEEEFIRNQERLKPQEEKIEEE----RSKVDDLRGTPMSVGNLEEIIDDNHA 519
++I+D L + +N RL+ Q + R ++ L+ VG + + + N
Sbjct: 22 QKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKV 81
Query: 520 IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAXX 699
+V ++ V I +D +++P V L + + ++ +L + DP+VS+M +EK
Sbjct: 82 LVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPD 141
Query: 700 ETYADIGGLDTQIQEIKESVEL 765
TY +GGL+ QI+EIKE +EL
Sbjct: 142 STYEMVGGLEKQIKEIKEVIEL 163
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 66.1 bits (154), Expect = 6e-12
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Frame = +1
Query: 349 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 516
LE+ K YLL E+ + L+ + ++ K +D L+ +G + + +D
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67
Query: 517 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAX 696
IV S G + V + VD+ L G V L+ ++ +L + DP+V M +E
Sbjct: 68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPG 127
Query: 697 XETYADIGGLDTQIQEIKESVEL 765
++A +GGL+ QI+E++E +EL
Sbjct: 128 DISFAGVGGLNEQIRELREVIEL 150
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 63.7 bits (148), Expect = 3e-11
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 21/155 (13%)
Frame = +1
Query: 364 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 507
D +M+ EF R EKI+E + K+ + + P VGN+ EI+D
Sbjct: 49 DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108
Query: 508 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 660
A++ TS ++ ++ V+ ++L PG + +N + ++ L + D
Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168
Query: 661 PMVSVMKLEKAXXETYADIGGLDTQIQEIKESVEL 765
V M++++ E Y+DIGGL QI+E+ E++ L
Sbjct: 169 SRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVL 203
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 47.2 bits (107), Expect = 3e-06
Identities = 26/91 (28%), Positives = 47/91 (51%)
Frame = +1
Query: 493 EEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVS 672
E+ + N +++ ++ VS+ V +E G V + +A+ L DP V+
Sbjct: 107 EQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVT 166
Query: 673 VMKLEKAXXETYADIGGLDTQIQEIKESVEL 765
+M++E+ TY D+GG QI+ ++E VEL
Sbjct: 167 MMQVEEKPDVTYGDVGGCKEQIERLREVVEL 197
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.29
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 331 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 510
R KLLKLE L+ ++E + + E K + E+ R + LR + + NL E+ID+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 316 PHTRCRLKLLKLERIKDYLLM 378
PHT RLK K +IKDYL M
Sbjct: 55 PHTAIRLKERKANKIKDYLTM 75
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 238 PIPTRVGKKKRKAKGPDAALK 300
PIP+R G++KRK +GP +K
Sbjct: 208 PIPSRRGRRKRKMRGPILPVK 228
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 703 TYADIGGLDTQIQEIKESVEL 765
T++ IGGL QI +I++ VEL
Sbjct: 277 TFSSIGGLQAQIAQIRDIVEL 297
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 379 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 477
EE+ I ++E + EE++EEE + +D P+
Sbjct: 65 EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 6.2
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 400 QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 576
Q+R K EE + E+ ++ L+ S + EE+ + + V S+HY +L ++
Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807
Query: 577 KDQLEPGCS 603
KD E CS
Sbjct: 1808 KD--ESSCS 1814
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 246 YTSW*KEKES*GTRCGSQASASHASYKMSTQVVKTRKNKGLFVDGRGVHP*SRTLEA-TG 422
Y + +EK+ C S A +++ Q +KNK D +H SR LE+ G
Sbjct: 151 YLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLKKNKSSLFDNPTIH--SRQLESMAG 208
Query: 423 RE 428
R+
Sbjct: 209 RK 210
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 346 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 516
KL + D MEEEF+ + + + EK SK L+ + + G L+E++ +N
Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225
Query: 517 AI 522
A+
Sbjct: 226 AL 227
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 301 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 480
L VT + LK + ++ DY E++ + + +K E E E S +G P S
Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 337 KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 453
K+L+ +R+ M E IRN K Q+E I ++ +++
Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,035
Number of Sequences: 5004
Number of extensions: 54841
Number of successful extensions: 170
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -