Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_J14
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 316 1e-86
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 119 3e-27
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 109 3e-24
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 71 1e-12
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 71 1e-12
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 66 2e-11
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 62 4e-10
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 58 1e-08
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 58 1e-08
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 44 1e-04
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 31 0.83
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 31 0.83
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 31 0.83
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 31 0.83
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 31 0.83
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 31 0.83
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 31 0.83
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 31 0.83
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern... 31 1.4
Z82286-3|CAB05309.1| 781|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 29 4.4
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 29 4.4
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 29 5.8
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein. 29 5.8
AF016443-1|AAC24277.1| 366|Caenorhabditis elegans Hypothetical ... 29 5.8
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 29 5.8
AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstrea... 29 5.8
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 28 7.7
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 316 bits (777), Expect = 1e-86
Identities = 148/179 (82%), Positives = 166/179 (92%)
Frame = +1
Query: 229 YEPPIPTRVGKKKRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQER 408
YE PIP+R+GKKK+ +KGPDAA KLP VTPH RCRLKLLK ERIKDYLLME+EFI+NQER
Sbjct: 28 YEAPIPSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQER 87
Query: 409 LKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQL 588
LKPQEE+ EEER+KVD+LRGTPM+VG+LEEIIDD HAIVST+VGSEHYV+I+SFVDK+QL
Sbjct: 88 LKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQL 147
Query: 589 EPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAXXETYADIGGLDTQIQEIKESVEL 765
EPGCSVLLNHK HAV+GVL DDTDPMVSVMKLEKA ETYAD+GGLD QIQEIKE+VEL
Sbjct: 148 EPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVEL 206
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 119 bits (286), Expect = 3e-27
Identities = 80/188 (42%), Positives = 104/188 (55%), Gaps = 14/188 (7%)
Frame = +1
Query: 244 PTRVGKK---KRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERL- 411
PT K K +G + A KLP V P +C ++LLK+ RI DYL +E+EFI Q
Sbjct: 15 PTHAAMKIAMKSGRRGIENANKLPTVAPKRQCLVRLLKMNRIHDYLQLEKEFITRQTSRH 74
Query: 412 -KPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDN-HAIVSTSVGS--EHYVSILSFVDK 579
+P + E+ V LRGTP ++ + E+ DD HA+V GS E YV ILS VDK
Sbjct: 75 GRPLAVQKRREQQLVQSLRGTPTTLARVHELFDDEKHAVVVVE-GSRREWYVPILSIVDK 133
Query: 580 DQLEPGCSVLLN----HKV--HAVVGVLGDDTDPMVSVMKLEKAXXETYADIGGLDTQIQ 741
D L V++ K A+VGVL D D K+EK ET+ DIGG ++QIQ
Sbjct: 134 DLLRLNALVMVKAGGMFKTVPSAIVGVLDDKIDSNAMGHKVEKTPKETFDDIGGCESQIQ 193
Query: 742 EIKESVEL 765
E+KESVEL
Sbjct: 194 ELKESVEL 201
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 109 bits (262), Expect = 3e-24
Identities = 55/151 (36%), Positives = 94/151 (62%)
Frame = +1
Query: 334 LKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDN 513
+KL LER +L + E++I+ + R E+++ + +V ++ P+ +G E +D N
Sbjct: 38 IKLTTLERQLAHLQVMEDYIKLETR--NLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQN 95
Query: 514 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKA 693
HAIV ++ GS +YV +LS +D++ L+PGCSV L+ +A+V VL + D + +++ ++
Sbjct: 96 HAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEK 155
Query: 694 XXETYADIGGLDTQIQEIKESVELLXPSGXL 786
+Y DIGGLD Q QE++E+VEL G L
Sbjct: 156 PDISYGDIGGLDMQKQEVREAVELPLTHGEL 186
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 70.9 bits (166), Expect = 1e-12
Identities = 49/174 (28%), Positives = 85/174 (48%)
Frame = +1
Query: 244 PTRVGKKKRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQE 423
P V RK DA + P+ + +++ + + + + + + Q+ L +
Sbjct: 3 PAPVFPNSRKPATLDANSDEQTLRPYFKTKVEQAE-QTVAEKSINVRRLMAQQKELNGKV 61
Query: 424 EKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCS 603
++EE S + + +G+ VG + + +D +V ++ V + + VD L G
Sbjct: 62 RLLKEEISHLHE-QGS--HVGEVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTR 118
Query: 604 VLLNHKVHAVVGVLGDDTDPMVSVMKLEKAXXETYADIGGLDTQIQEIKESVEL 765
V L +A+ VL DP+VS+M +EK TY +GGLDTQI+EIKE +EL
Sbjct: 119 VALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIEL 172
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 70.9 bits (166), Expect = 1e-12
Identities = 49/174 (28%), Positives = 85/174 (48%)
Frame = +1
Query: 244 PTRVGKKKRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQE 423
P V RK DA + P+ + +++ + + + + + + Q+ L +
Sbjct: 24 PAPVFPNSRKPATLDANSDEQTLRPYFKTKVEQAE-QTVAEKSINVRRLMAQQKELNGKV 82
Query: 424 EKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCS 603
++EE S + + +G+ VG + + +D +V ++ V + + VD L G
Sbjct: 83 RLLKEEISHLHE-QGS--HVGEVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTR 139
Query: 604 VLLNHKVHAVVGVLGDDTDPMVSVMKLEKAXXETYADIGGLDTQIQEIKESVEL 765
V L +A+ VL DP+VS+M +EK TY +GGLDTQI+EIKE +EL
Sbjct: 140 VALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIEL 193
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 66.5 bits (155), Expect = 2e-11
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Frame = +1
Query: 394 RNQERLKPQEEKIEEE----RSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSI 561
+N RL+ Q ++ + + ++ L VG + + +D +V ++ V +
Sbjct: 50 QNVRRLQAQRNELNTKVRMLKEELQQLHEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDV 109
Query: 562 LSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAXXETYADIGGLDTQIQ 741
+D + L G V L +A+ +L + DP+VS+M +EK TY +GGLD QI+
Sbjct: 110 DKSIDINSLNTGARVALRADSYALHKLLPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 169
Query: 742 EIKESVEL 765
EIKE +EL
Sbjct: 170 EIKEVIEL 177
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 62.5 bits (145), Expect = 4e-10
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Frame = +1
Query: 373 LMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID--DNH---------- 516
+M E R +E+I+E ++ + P V N+ E++D DN
Sbjct: 47 IMRSEVQRINHSATTLKERIKENTERIKVNKTLPYLVSNVVELLDLEDNTEEEGANVDLD 106
Query: 517 ------AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVM 678
A++ TS + +++ ++ VD D+L+PG V +N + ++ L + D V M
Sbjct: 107 AQKTKCAVIKTSTRATYFLPVVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAM 166
Query: 679 KLEKAXXETYADIGGLDTQIQEIKESVEL 765
++++ E Y+DIGG D QIQE+ E+V L
Sbjct: 167 EVDERPTEQYSDIGGCDKQIQELIEAVVL 195
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 57.6 bits (133), Expect = 1e-08
Identities = 36/140 (25%), Positives = 68/140 (48%)
Frame = +1
Query: 346 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIV 525
KL +D ++ + + + Q +K E + + L+ VG + + + + IV
Sbjct: 24 KLAECRDIEQKLKDLRKKESEMTKQFDKSEND---IKSLQSVGQIVGEVLKQLSEEKFIV 80
Query: 526 STSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAXXET 705
+ G + V ++K++L+ G V L+ ++ L + DP+V M E +
Sbjct: 81 KATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNIS 140
Query: 706 YADIGGLDTQIQEIKESVEL 765
Y+D+GGL QI+E++E VEL
Sbjct: 141 YSDVGGLAEQIRELREVVEL 160
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 57.6 bits (133), Expect = 1e-08
Identities = 36/140 (25%), Positives = 68/140 (48%)
Frame = +1
Query: 346 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIV 525
KL +D ++ + + + Q +K E + + L+ VG + + + + IV
Sbjct: 32 KLAECRDIEQKLKDLRKKESEMTKQFDKSEND---IKSLQSVGQIVGEVLKQLSEEKFIV 88
Query: 526 STSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAXXET 705
+ G + V ++K++L+ G V L+ ++ L + DP+V M E +
Sbjct: 89 KATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNIS 148
Query: 706 YADIGGLDTQIQEIKESVEL 765
Y+D+GGL QI+E++E VEL
Sbjct: 149 YSDVGGLAEQIRELREVVEL 168
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Frame = +1
Query: 472 PMSVGNLEEII-DDNHA---IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVG 639
P+ V +II D H +++ ++ V + V +E G V ++ + +
Sbjct: 94 PLQVARCTKIITSDKHDPRYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHL 153
Query: 640 VLGDDTDPMVSVMKLEKAXXETYADIGGLDTQIQEIKESVE--LLXP 774
L DP V++M++E+ TY+D+GG QI++++E VE LL P
Sbjct: 154 PLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHP 200
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 373 LMEEEFIRNQERLKPQEEKIEEERSKVDD 459
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 373 LMEEEFIRNQERLKPQEEKIEEERSKVDD 459
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 373 LMEEEFIRNQERLKPQEEKIEEERSKVDD 459
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 373 LMEEEFIRNQERLKPQEEKIEEERSKVDD 459
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 259 KKKRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE-RLKPQEEKIE 435
+++ K K +A + ++ P R R++ +K E ++ + E E ++ +E RLK +EEK++
Sbjct: 882 RREEKCKEKEAEEENEKLIPE-RKRMEAIKEE--EERVKAEREKVKKEEERLKAEEEKVK 938
Query: 436 EERSKV 453
E+ KV
Sbjct: 939 VEKEKV 944
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 250 RVGKKKRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIR-NQERLKPQEE 426
RV ++ K K + LK + + E++K +E ++ +ERLK +EE
Sbjct: 915 RVKAEREKVKKEEERLKAEEEKVKVEKEKVKAEEEKVKVEKERNKEKVKAEEERLKAEEE 974
Query: 427 KIEEERSKV 453
K++ E+ KV
Sbjct: 975 KVKIEKEKV 983
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 373 LMEEEFIRNQERLKPQEEKIEEERSKVDD 459
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 373 LMEEEFIRNQERLKPQEEKIEEERSKVDD 459
L+EEE R +ERLK EK+EE VD+
Sbjct: 3 LLEEELERAEERLKIATEKLEEATHNVDE 31
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 373 LMEEEFIRNQERLKPQEEKIEEERSKVDD 459
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
(werner's syndrome) relatedprotein 1 protein.
Length = 1056
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 GKKKRKAKGPDAALKLPQVTPH-TRCRLKLLKLERIKDYL-LMEEEFIRN--QERLKPQE 423
GKK++ A Q T T K+L +I++Y E E + N ++ +
Sbjct: 747 GKKEKAAPSTVPGASRSQSTKSSTEIPTKILGANKIREYEPANENEQLMNLKKQEVTGLP 806
Query: 424 EKIEEERSKVDDLRGTPMSVGNLEEI 501
EKI++ RS++DD+R + + N+ E+
Sbjct: 807 EKIDQLRSRLDDIR---VGIANMHEV 829
>Z82286-3|CAB05309.1| 781|Caenorhabditis elegans Hypothetical
protein W02A2.6 protein.
Length = 781
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 337 KLLKLERIKDY-LLMEEEFIRNQERLKPQEEKIEEERSK 450
KL +L + K + LLM E F RNQE L+ +E+K RSK
Sbjct: 89 KLKELMKKKSFILLMAERFDRNQE-LQRKEDKFARLRSK 126
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 370 LLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 510
+L+EE+ R ++RLK K+E+ D+ + ++ N ++ DD
Sbjct: 65 VLVEEDLERTEDRLKTATSKLEQATKAADEADRSRRALSNQIDMDDD 111
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 370 LLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 510
+L+EE+ R ++RLK K+E+ D+ + ++ N ++ DD
Sbjct: 65 VLVEEDLERTEDRLKTATSKLEQATKAADEADRSRRALSNQIDMDDD 111
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 298 KLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQ-EEKIEEERSKVDDLR 465
KL Q+ R++ L+ ++ + M E+ + E +K Q E+K+ E R ++DDL+
Sbjct: 1447 KLTQLRNELTARIEQLESQKSNEQAQMSEK-LSQVESMKVQIEQKLYETREELDDLK 1502
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 346 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 510
KL+ K+ L E+ R Q+ K + ++ S +DD + LEE++D+
Sbjct: 207 KLDAEKEKALAEKRLEREQKLYKDLKSSSDDTSSSIDDKMNFDDEIEYLEEMLDN 261
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 346 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 510
KL+ K+ L E+ R Q+ K + ++ S +DD + LEE++D+
Sbjct: 207 KLDAEKEKALAEKRLEREQKLYKDLKSSSDDTSSSIDDKMNFDDEIEYLEEMLDN 261
>AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein.
Length = 481
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 373 LMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 477
L E+ R + R + +EEK+++E SK+ +L P+
Sbjct: 364 LFEKIEAREERRKRKEEEKLKDELSKIKELEEQPV 398
>AF016443-1|AAC24277.1| 366|Caenorhabditis elegans Hypothetical
protein C17E7.5 protein.
Length = 366
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 283 PDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEF 390
PDA L+L Q++P R++ L + ++ + + +EEF
Sbjct: 240 PDAILRLKQISPQFLQRIRSLLVMKLIELKITDEEF 275
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 421 EEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ-LEPG 597
EE +E E +DD+ + GNLE D + S+ +E ++ +V++ + L G
Sbjct: 2739 EETVETEEMIMDDMMDLYYTPGNLEIARDTFDKLEIASIMNEILYTVDQYVEETEILFRG 2798
Query: 598 CSVLLNHKVHAVVGV 642
S + + AV+ +
Sbjct: 2799 ASTAADRQAFAVMSI 2813
>AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstream,
human gene xe7related protein 7 protein.
Length = 495
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 373 LMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 477
L E+ R + R + +EEK+++E SK+ +L P+
Sbjct: 364 LFEKIEAREERRKRKEEEKLKDELSKIKELEEQPV 398
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 346 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDL 462
K E K+ + +EE + E K +EEK EEE K D++
Sbjct: 323 KEEEQKEEVEKKEEEEKKDEEPKKEEEKKEEEEKKEDEV 361
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 640 VLGDDTDPMVSVMKLEKAXXETYADIGGLDTQIQEIKESVEL 765
V+ + DP+ + E Y D+GG+ Q+ +IKE VEL
Sbjct: 186 VIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVEL 227
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 640 VLGDDTDPMVSVMKLEKAXXETYADIGGLDTQIQEIKESVEL 765
V+ + DP+ + E Y D+GG+ Q+ +IKE VEL
Sbjct: 186 VIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVEL 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,783,250
Number of Sequences: 27780
Number of extensions: 327412
Number of successful extensions: 1127
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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