Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J13
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       33   0.41 
06_02_0127 + 12140843-12140966,12141170-12141567                       29   5.0  
07_03_0558 + 19461369-19462448                                         29   6.6  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 21/66 (31%), Positives = 23/66 (34%)
 Frame = +3

Query: 663 PPPXXKXSKKSPPNXXGAXPQXKXKXXXXSPXXXPFSPXFXXPLXXKKXXPPFPPXGXXG 842
           PPP    +   PP   G  P    K     P     SP    P   KK  PP PP    G
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPP--PKG 384

Query: 843 XFXKPP 860
              +PP
Sbjct: 385 GASRPP 390


>06_02_0127 + 12140843-12140966,12141170-12141567
          Length = 173

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = -1

Query: 816 GXGXFXXGGGGKXXGKKGXXXGXXXXFFXXFGGXPPXNWGGIFLXFXXGGG 664
           G G +  G GG   G  G   G     +  +GG     +GG    +  GGG
Sbjct: 92  GYGGYGGGYGGGYGGGGGGGGGGGYGGYGGYGGYGGGGYGGYNKGYGGGGG 142


>07_03_0558 + 19461369-19462448
          Length = 359

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/54 (35%), Positives = 20/54 (37%)
 Frame = -1

Query: 825 GEKGXGXFXXGGGGKXXGKKGXXXGXXXXFFXXFGGXPPXNWGGIFLXFXXGGG 664
           G  G G F  GGGG   G  G   G     F   GG      GG+      GGG
Sbjct: 51  GFGGGGGFGGGGGGGLGGGGGGLGGGHGGGFGGGGGLGGGASGGVGGGGGFGGG 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,576,273
Number of Sequences: 37544
Number of extensions: 285697
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)