Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_J12
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 35 0.013
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 33 0.071
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 32 0.094
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 30 0.50
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 29 0.66
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.87
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 1.2
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 29 1.2
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 1.2
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 1.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.5
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 28 2.0
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 2.0
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 2.7
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 3.5
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 27 3.5
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 27 4.7
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 27 4.7
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 6.1
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 6.1
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 6.1
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa... 26 6.1
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 8.1
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 8.1
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 8.1
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 35.1 bits (77), Expect = 0.013
Identities = 35/170 (20%), Positives = 76/170 (44%)
Frame = +2
Query: 176 EDSDDEEHILQRLQETKEIQKLRERPNGVSIIALATGEKVTLEDEITCKDPFKVKTGGMI 355
E+ DD + L++ E + +K+R G++ L E + T +P +
Sbjct: 60 EELDDNDIRLRQALEATKRRKIRNSIIGINAEKLLNQETKKEKQLNTANEPHEANDQTSA 119
Query: 356 NMQALKNGKLKQVDDAYDTGIGTQFSAETNKRDEDEEMMKYIEEQLAKRKEGCDKDNKDH 535
L +L V+D +F+ +TN+ D + ++ ++E++L ++E ++ ++
Sbjct: 120 QSSKLIEAQLPTVED--------RFAKQTNEVDINTHLLNFVEKKL--KQERLAQNYSEN 169
Query: 536 NHTETLKYLSPEEAALLSLPDHLRVSSNQRSEEMLSNQMLSGIPEVDLGI 685
T L + E+ + ++ + L + + + + L I EVDLGI
Sbjct: 170 GETNALN--TKNESTVQNIKNSLHPNEHSFIRDAAA---LGAIREVDLGI 214
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 32.7 bits (71), Expect = 0.071
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +2
Query: 641 SNQMLSGIPEVDLGIDAKIKNI--EATEEAKMKLIWDRQNKKDGPSQFVPTN 790
SN L G+ E+ +DAK K++ +A E+ M + +R NK+ PS + PTN
Sbjct: 274 SNPELEGVRELLSTLDAK-KSLTDKALEKGLMAITKERFNKRVSPSVYAPTN 324
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 32.3 bits (70), Expect = 0.094
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Frame = +2
Query: 98 SQENRQVEEIKLKSKKPRNLRTRIKDEDSDDEEHILQRLQETKEIQKLRERPNGVSIIAL 277
+++N++ + K+ S K +N++ K +S + + + + GV++ +
Sbjct: 3 ARKNQKSPKPKVASSKLKNIKKSSKRNNSQSST---EPRKNATSLDSKKTTKKGVALPEI 59
Query: 278 ATGEKVTLEDEITCKDPFKVKTGGMINMQAL-KNGKLKQVDDAYDTGIGTQFSAETNKRD 454
A E + E ++P +K IN + L K + D YD QF +T++
Sbjct: 60 AERELTQEDIEFFNENPSSLKYLSSINPEDLGKKVEKGPRPDIYDLKKSQQFELDTSRLS 119
Query: 455 EDEE 466
DEE
Sbjct: 120 SDEE 123
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 29.9 bits (64), Expect = 0.50
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +2
Query: 491 LAKRKEGCDKDNKDHNHTETLKYLSPEEAALLSLPDHLRVSSNQRSEEMLSNQMLSGIPE 670
L +K+G D D +H+ LSP +A L D L N R+ S L + E
Sbjct: 21 LLNKKDGNDDDKAEHSKRSGYHGLSPLDALALKHRD-LNRKLNLRAMMSKSEDNLQILKE 79
Query: 671 VDLGIDAKIKNIEA 712
G + + NIE+
Sbjct: 80 TTSGSSSDLLNIES 93
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 119 EEIKLKSKKPRNLRTRIKDEDSDDEEHILQRLQETKEIQKL 241
EEI K ++ + LR R + D ++ ++ L+ E+QKL
Sbjct: 104 EEILAKKREEQKLRKRSRQNDDGSDDDEVENLKNDLELQKL 144
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 452 DEDEEMMKYIEEQLAKRKEGCDKDNKDHNHTETLK 556
DE+E + K EEQ +++ + D D + E LK
Sbjct: 102 DEEEILAKKREEQKLRKRSRQNDDGSDDDEVENLK 136
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 0.87
Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 1/163 (0%)
Frame = +2
Query: 89 DSDSQENRQVEEIKLKSKKPRNLRTRIK-DEDSDDEEHILQRLQETKEIQKLRERPNGVS 265
++ ++ R++++I+ K KK R+ + ++K ++ + + +RL E + QK E
Sbjct: 579 ENKRKQERELKKIREKEKK-RDKKKQLKLAKEEERQRREAERLAE-QAAQKALEAKRQEE 636
Query: 266 IIALATGEKVTLEDEITCKDPFKVKTGGMINMQALKNGKLKQVDDAYDTGIGTQFSAETN 445
+++ E E ++ + K Q + KLK+ D + + E
Sbjct: 637 ARKKREEQRLKREQEKKQQELERQKREEK-QKQKEREKKLKKQQQEADR---EKMAREQR 692
Query: 446 KRDEDEEMMKYIEEQLAKRKEGCDKDNKDHNHTETLKYLSPEE 574
R+E+E+ + +EE+ KR+E DK+ ++ E L+ S E+
Sbjct: 693 LREEEEK--RILEER--KRREKLDKEEEERRRRELLEKESEEK 731
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 28.7 bits (61), Expect = 1.2
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Frame = +2
Query: 173 DEDSDDEEHILQRLQETKEI--QKLRERPNGVSIIALATGEKVTLEDEITCKDPFKVKTG 346
D+ + E I Q LQ+TKE+ + +E + ++ K+ E E + K
Sbjct: 535 DQLQEYVEEITQELQDTKEVLSKSSKESDDYEEVVG-----KLRTEAEREIEKFEKTIRE 589
Query: 347 GMINMQALKNGKLKQVDDAYDTGIGTQFSAETNKRDEDEEMMKYIEEQLAKRKEGCDKDN 526
++ K K D+ T + +++ + ++ DE ++ ++ +EE+ K KE D +
Sbjct: 590 NEESISLFKEEVEKLTDEI--TQLSERYNDKCHEFDELQKRLQTLEEENNKAKE--DSTS 645
Query: 527 KDHNHTETLKYLSPEEAAL-LSLPDHLRVSSNQRSEEMLSN 646
K N E LK E +L ++ +V + + SE + SN
Sbjct: 646 KTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVKSN 686
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 461 EEMMKYIEEQLAKRKEGCDKDNKDHNHTETLKYLSPEEAALLSLPDHLRVSS 616
+EM+ Y++ + G K +K + + ETL +L LLS P +V++
Sbjct: 614 QEMVTYLQTMYLESLAGLPKHDKSYVYLETLDHLCTAMVDLLSDPSIRKVTT 665
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 83 MADSDSQENRQVEEIKLKSKKPRNLRTRIKDEDSDDEEHILQRLQETKEIQKLRERPNGV 262
+A S + ++ EEIK+ S K + T + S+ E TKE Q + P G+
Sbjct: 531 LARSRERARKKAEEIKISSSKMNSSPTITNERSSNVESSKKVEAIYTKEPQSITNSPEGL 590
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 92 SDSQENRQVEEIKLKSKKPRNLRTR-IKDEDSDDEEHILQRLQETKEIQKLRE 247
++ EN V K SKK + + + K++ SDDE L+ Q KE+ + E
Sbjct: 42 AEKSENLAVSSEKTTSKKKKGKKNKGNKNQVSDDESQELESPQGPKELTAVTE 94
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/72 (19%), Positives = 36/72 (50%)
Frame = +2
Query: 431 SAETNKRDEDEEMMKYIEEQLAKRKEGCDKDNKDHNHTETLKYLSPEEAALLSLPDHLRV 610
S+ +++ +E+EE + IEE+ + + + + +E+ S EE ++ + +
Sbjct: 140 SSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKE 199
Query: 611 SSNQRSEEMLSN 646
S++ S + S+
Sbjct: 200 GSSESSSDSESS 211
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 101 QENRQVEE-IKLKSKKPRNLRTRIKDEDSDDEEHILQRLQETKEIQKLRERPNGVS 265
QEN + + +++ + +L ++KD + +E I+Q KE+ + RER N +S
Sbjct: 680 QENFSLHKALEVMRETSSDLDKQLKDATASQKELIVQTSSFQKELVEERERHNAIS 735
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 95 DSQENRQVEEIKLKSKKPRNLRTRIKDEDSDDE--EHILQRLQETKEI 232
D +N E + K ++ N D+DSD++ E I Q+ ++ K+I
Sbjct: 167 DVSDNTDEERTESKGQQESNSAEEYDDDDSDEDRMEEIFQQFKKEKQI 214
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = +2
Query: 446 KRDEDEEMMKYIEEQLAKRKEGCDKDNKDHNHTETLKYLSPEEAALLSLPDHLRVSSNQR 625
++ E EE ++ +EE+ AK+K+ + K L L P+ L L + S +
Sbjct: 107 QKKEKEEELRNLEEEKAKKKKDANLKRK------FLDTLDPKAREFLKLSSSISNSRSWE 160
Query: 626 SEEMLSNQMLSGIPEVD 676
+EE+ ++ + + D
Sbjct: 161 NEEVFDTEITNPVIPAD 177
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +2
Query: 443 NKRDEDEEMMKYIEEQLAKRKEGCDKDNKDHNHTETLKYLSPEEAALLSLPDHLRVSSNQ 622
NK + ++ + E+ + +E + N+D N ETL AA L ++ NQ
Sbjct: 796 NKENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLN--ERISAAADELSSMESINKNQ 853
Query: 623 RSEEMLSNQMLSGIPE 670
+E L+ Q S + E
Sbjct: 854 ANELKLAKQKCSNLQE 869
Score = 26.6 bits (56), Expect = 4.7
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Frame = +2
Query: 83 MADSDSQENRQVEEIKLKSKKPRNLRTRIKDEDSDDEEHILQRLQETKEIQKLRERPNGV 262
++ +S Q E+KL +K NL+ +I + +EH T++I L +
Sbjct: 843 LSSMESINKNQANELKLAKQKCSNLQEKINFGNKLAKEH-------TEKISSLEKDLEAA 895
Query: 263 SIIALATGEKV-TLEDEITCKDPFK-VKTGGMINMQALKNGKLKQVDDAYDTGIGTQFSA 436
+ A +++ T++ E D K V +++ N K K+V A + +
Sbjct: 896 TKTASTLSKELKTVKSE---NDSLKSVSNDDQNKEKSVNNEKFKEVSQAL-----AEANE 947
Query: 437 ETNKRDEDEEMMK 475
+ N RDE+ E +K
Sbjct: 948 KLNARDEEIERLK 960
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 3.5
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Frame = +2
Query: 299 LEDEITCK--DPFKVKTGGMINMQALKNGKLKQVDDAYDTGIGTQFSAETNKRDEDEEMM 472
+ED +TC DP + G + L G DAY G+ + E KR +
Sbjct: 137 VEDALTCLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLDFDPNNEVLKRGLEAANK 196
Query: 473 KYIEEQLAKRKEGCDKDNKDHNHTETLKYL----SPEEAALLSLPDHLRVSSNQRSEEML 640
+ + + G D+ L + P+ +L++ P + ++ N L
Sbjct: 197 QLNQPSDSSATSGADQARTSAGAAPDLGSIFGGGMPDLGSLMNNPAVMNMARNLMQSGAL 256
Query: 641 SNQM 652
+N M
Sbjct: 257 NNIM 260
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -2
Query: 550 CFRMVVVFIVFVTSLFSFC----KLFFDVLHHLLIFV 452
CFR+ ++F +FV SF ++D LH IFV
Sbjct: 576 CFRLGLLFSIFVVGFSSFILAKQDTYYDSLHPRRIFV 612
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +2
Query: 86 ADSDSQENRQVEEIKLKSKKPRNLRTRIKDEDSDDEEHILQRLQETKEIQKLRERPNGVS 265
+D+ + N V K + + P+ D DDEE+ + + + + P+ S
Sbjct: 7 SDASTPTNHTVSSKKRRGRPPKGSYAAYGSSDDDDEEYSGRTRRRNRNTRPRVSAPSSSS 66
Query: 266 IIALAT--GEKVTLEDE 310
+ + TLED+
Sbjct: 67 TVVPKDLYSHRATLEDD 83
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 89 DSDSQENRQVEEIKLKSKKPRNLRTRIKDEDSDDEEHILQRLQETKEIQKLRE 247
D+D+ EN EE + R +R ED +DE + Q ++ K+ +K E
Sbjct: 46 DNDNDENDSSEESATDEEAERQVREGFIVEDEEDE--VPQEIRRKKKRKKHAE 96
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 236 KLRERPNGVSIIALATGEKVTLEDEITCKDPFKVKTGGMINMQALKNGKLKQVDDAYD 409
K+R R + VS++ L +T DE+ K K+K G++ +LK VD+ D
Sbjct: 776 KIRLRLHEVSLV-LVVAHDITF-DELLAKVEHKIKLCGILKQAVPFRVRLKYVDEDGD 831
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +2
Query: 425 QFSAETNKRDEDEEMMKYIEEQ----LAKRKEGCDKDNKDHNHTETLKY 559
Q E+ EDE +K + EQ L KEG +N D ++ + L Y
Sbjct: 939 QRRCESQPIPEDEAKLKLLAEQEDEHLHPEKEGMSVENSDDDYHDDLDY 987
>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 432 ENCVPIPVSYASSTCFSFPFLRACMLIIPPV 340
++C + YA ++F F+ L++PPV
Sbjct: 106 DDCFKNRIEYAKLQNYNFEFVNVSSLVVPPV 136
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -2
Query: 526 IVFVTSLFSFCKLFFDVLHHLLIFVAFVRFR*KLCAYSG-----IIRIIHLLQFPV 374
I F+T++ F +F ++ + F AF+ F K A + + + +LLQFP+
Sbjct: 472 IGFITAIGDFAWIFTTIIVTTVAFGAFIIFHGKTQALTADIVFPAVSLFNLLQFPL 527
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 74 IMNMADSDSQENRQVEEIKLKSKKPRNLRTRIKDEDSDDEEHILQRLQET 223
+M + + R +EE K K + R L+ D +EE +R++ET
Sbjct: 141 LMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEAREKRMKET 190
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 168 IRVRRFLGFLDFNLISSTCRFS*ES 94
+RV F +DF +I S C+FS E+
Sbjct: 190 VRVTSFRSSIDFIVIESICKFSIET 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,602
Number of Sequences: 5004
Number of extensions: 62602
Number of successful extensions: 302
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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